PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G14250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 251aa    MW: 26728.9 Da    PI: 10.1657
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G14250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY932.3e-29179236258
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       D y+WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ ++p ++++tY g+H+h
  OPUNC02G14250.1 179 ADDYSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPREPVMLIVTYDGDHRH 236
                      69************************9888***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-13138176IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-31165239IPR003657WRKY domain
SuperFamilySSF1182902.35E-25173239IPR003657WRKY domain
PROSITE profilePS5081130.607173239IPR003657WRKY domain
SMARTSM007749.1E-32178238IPR003657WRKY domain
PfamPF031061.5E-24180236IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MADPFPTAAR GAGVRDGGEQ GGTAGQLAVT VTPSRLRTAV ASMLNRTGHA RFRRAPVVVQ  60
EKEEAAAAAA AARDVIVRCD GLSASASSSF PSSVTGVTGD GSVSNARAVL LAAGGRSTGG  120
DKPPPMQSAS DYASGCFKRN SDDDGERCHC SKKKRKASWR ARRRIRVPAI SSQNADIPAD  180
DYSWRKYGQK PIKGSPYPRG YYKCSTVRGC PARKHVERDP REPVMLIVTY DGDHRHGEPT  240
DRLEDALASS V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-20166239274WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1105870.0AK110587.1 Oryza sativa Japonica Group cDNA clone:002-168-F03, full insert sequence.
GenBankAY6769230.0AY676923.1 Oryza sativa (indica cultivar-group) transcription factor WRKY42 (WRKY42) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624842.11e-112WRKY transcription factor WRKY51-like
TrEMBLA0A0E0JZL00.0A0A0E0JZL0_ORYPU; Uncharacterized protein
STRINGOPUNC02G14250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-39WRKY DNA-binding protein 11