PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G16450.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 266aa    MW: 27520.9 Da    PI: 10.3016
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G16450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20102151255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp   + + +r++lg+f+tae Aa+a++ a+++++g
  OPUNC02G16450.1 102 HYRGVRRRP-WGKWAAEIRDP---N-KaARVWLGTFDTAEAAAAAYDDAALRFKG 151
                      7********.**********9...3.35************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-32101160IPR001471AP2/ERF domain
PfamPF008471.3E-13102151IPR001471AP2/ERF domain
CDDcd000181.88E-17102160No hitNo description
SuperFamilySSF541714.32E-22102160IPR016177DNA-binding domain
PROSITE profilePS5103225.132102159IPR001471AP2/ERF domain
SMARTSM003804.7E-34102165IPR001471AP2/ERF domain
PRINTSPR003672.0E-11103114IPR001471AP2/ERF domain
PRINTSPR003672.0E-11125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSSPQPLGSG GRAPPDWHVE QRQPVDAAVT MAAAYGTMRY HQYHPHIAVP PGPTPSSETT  60
TDWRPPAAQG EEMGPAAAAA AAAQAVDAQG AVAAAAAAAE RHYRGVRRRP WGKWAAEIRD  120
PNKAARVWLG TFDTAEAAAA AYDDAALRFK GAKAKLNFPE RVRGRTGQGG FLVSPAVPRP  180
PHAVTAPAVT PAPSPFPDLI RYARLLRSGD AHDAAAAPAQ ILDFAAQRLV GVSPAMAPRP  240
PSTLPTTTAT SSPSAWPHGG GGGHGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23101162466ATERF1
3gcc_A2e-23101162466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0057491e-141AP005749.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0047A17.
GenBankAP0058421e-141AP005842.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0003H22.
GenBankAP0149581e-141AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623923.11e-67ethylene-responsive transcription factor ERF110
TrEMBLA0A0E0K0E80.0A0A0E0K0E8_ORYPU; Uncharacterized protein
STRINGOPUNC02G16450.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44473571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.17e-26related to AP2 6l