PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G16560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 492aa    MW: 54218.8 Da    PI: 7.6205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G16560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056688123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y C+ C+k F r  nL+ H r H
  OPUNC02G16560.1 66 YICEVCHKGFQRDQNLQLHRRGH 88
                     89*******************88 PP
2zf-C2H210.90.0014142164123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC  C+k +  +s+ k H + +
  OPUNC02G16560.1 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                      58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.38E-66588No hitNo description
Gene3DG3DSA:3.30.160.602.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035597107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.38E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MSHTSEEESL NNLQQQPKLE ACAAGSSKGD AIMPVVKKRR GHPGNPDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYLCP EVTCPHHDAT  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDTSRV NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLSSN  240
DHNSDIHLRS LSPYALITRN TALFSNKISP KESGFPLDGS VSSYPYMSMN SPYMSATALL  300
QKAAEMGAKA SQDPISPLLL KSFPNNLTSP RDHMNISSGS LGDSLGNSTV NSACMKTTED  360
ENSYMIARGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR AEKDNPSIFP ENQTQHNRQD  420
HISGAGDADA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL  480
DPTALEKPIW DS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33138201366Zinc finger protein JACKDAW
5b3h_F9e-33138201366Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879352.10.0protein indeterminate-domain 2-like
TrEMBLA0A0E0K0G20.0A0A0E0K0G2_ORYPU; Uncharacterized protein
STRINGOPUNC02G16560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2