PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G17880.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 219aa    MW: 22573.4 Da    PI: 8.5161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G17880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64e-2099148255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++aa+++++g
  OPUNC02G17880.1  99 RYRGVRRRP-WGKWAAEIRDPR----KaARIWLGTFATAEDAARAYDAAALRFRG 148
                      7********.**********94....36*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-3199157IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-2299157IPR016177DNA-binding domain
PROSITE profilePS5103225.79199156IPR001471AP2/ERF domain
SMARTSM003801.4E-3599162IPR001471AP2/ERF domain
PfamPF008471.3E-1399148IPR001471AP2/ERF domain
PRINTSPR003671.2E-11100111IPR001471AP2/ERF domain
CDDcd000181.22E-13107155No hitNo description
PRINTSPR003671.2E-11122138IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MAALFGAAET AAIVAALTCV IADGRGGGVG VPLPAPSLVV PPRVGTGSEH DDGRRVVWDE  60
EPAVGVISAG DHAGEASMAE AEAAAAAAAI VVAPATVRRY RGVRRRPWGK WAAEIRDPRK  120
AARIWLGTFA TAEDAARAYD AAALRFRGRR AKLNFSEEAS RSCRLSQGND HMSCSPSIAN  180
AHLLGSWTAG PPPPSLSATT MTTLLGGSHG SNGAENGRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2198155462ATERF1
3gcc_A5e-2198155462ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0056111e-102AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBankAP0149581e-102AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624467.21e-68ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0K0X21e-153A0A0E0K0X2_ORYPU; Uncharacterized protein
STRINGOPUNC02G17880.11e-153(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17401811
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.14e-16ERF family protein