PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G17920.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 232aa MW: 25031.4 Da PI: 8.4735

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G17920.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26	1.7e-08	88	132	7	32
HHHHHHHHHHHHHHHHHHCTSCCC..................... CS HLH 7 erErrRRdriNsafeeLrellPkas...................k 32 erEr RR+r+N+ f+ +r+l+P+++ k OPUNC02G17920.1 88 ERERDRRRRMNDMFAGIRRLVPNLPekvrsrpaagaraapppslK 132 89*********************7656666666665555555550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.02E-7	80	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-5	87	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-6	88	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MSRDQRHGRQ LPLATSGITF NGVPLSPLTP AAAAAVESDD DDVVIIDACN GKRKVGDGEE 60 GRGSQGDDDD VAAVHGGGGG DQACMFAERE RDRRRRMNDM FAGIRRLVPN LPEKVRSRPA 120 AGARAAPPPS LKTWSWGDNV VVSVLGNIGN MTVRAPLRKA GVLAMASAAL KRYNITAVTS 180 LSGTDPSQTQ NMFMFYTIID MPDRQPQFVH PKVYEAMYRA AAAEIAAWIN CY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005611	6e-90	AP005611.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0051E21.
GenBank	AP014958	6e-90	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624470.2	1e-57	uncharacterized protein LOC107276567 isoform X1
Refseq	XP_025878834.1	1e-57	uncharacterized protein LOC107276567 isoform X2
TrEMBL	A0A0E0K0X6	1e-170	A0A0E0K0X6_ORYPU; Uncharacterized protein
STRING	OPUNC02G17920.1	1e-171	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18142	7	7