PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G18340.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 204aa MW: 22540.2 Da PI: 6.4994

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G18340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	105.5	6.9e-33	7	124	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGf+F P+deelvv++L++kv+ +++ ++i+++ + ++Pw+L+ k+ + ++wyfF++ k +r+ ++gyW+ g d++v s OPUNC02G18340.1 7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPHCYNPWELNGKALQAGNQWYFFCHLTK--------SRTSSNGYWSPIGADETVGS 91 79***********************999.89**********966667789***866........577789*********9 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+ vglkktL f g+ ++g +t+W+mhey+l OPUNC02G18340.1 92 -GGRSVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124 .99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-45	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	40.824	7	168	IPR003441	NAC domain
Pfam	PF02365	2.2E-21	8	124	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLPHCYNPW ELNGKALQAG 60 NQWYFFCHLT KSRTSSNGYW SPIGADETVG SGGRSVGLKK TLLFSIGEPS EGIRTNWIMH 120 EYHLLDGDCV AGSGSNSTSS SSNRKSHRKR GHSSMESNSW VLCRVFESSC GSQVSFHGEG 180 TELSCLDEVF LSLDDYDEVS LPNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-32	6	173	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-32	6	173	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-32	6	173	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-32	6	173	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-32	6	173	19	173	NAC domain-containing protein 19
3swm_B	1e-32	6	173	19	173	NAC domain-containing protein 19
3swm_C	1e-32	6	173	19	173	NAC domain-containing protein 19
3swm_D	1e-32	6	173	19	173	NAC domain-containing protein 19
3swp_A	1e-32	6	173	19	173	NAC domain-containing protein 19
3swp_B	1e-32	6	173	19	173	NAC domain-containing protein 19
3swp_C	1e-32	6	173	19	173	NAC domain-containing protein 19
3swp_D	1e-32	6	173	19	173	NAC domain-containing protein 19
4dul_A	1e-32	6	173	16	170	NAC domain-containing protein 19
4dul_B	1e-32	6	173	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108454	0.0	AK108454.1 Oryza sativa Japonica Group cDNA clone:002-143-C12, full insert sequence.
GenBank	CT831377	0.0	CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006647372.1	1e-133	PREDICTED: NAC transcription factor 29-like isoform X2
Swissprot	Q8GWK6	3e-61	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0E0K128	1e-149	A0A0E0K128_ORYPU; Uncharacterized protein
STRING	OPUNC02G18340.1	1e-149	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	1e-61	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]