PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G18630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 182aa    MW: 19115.4 Da    PI: 4.7198
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G18630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-181868155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++y+GVr++k +g+Wv+eIr p   g + r++lg+f +ae+Aa a++ a+++l+g
  OPUNC02G18630.1 18 PQYRGVRRRK-WGKWVSEIRQP---GTKVRIWLGSFESAEMAAVAHDVAALRLRG 68
                     68*****998.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.52E-281877No hitNo description
PfamPF008479.8E-121868IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-291977IPR001471AP2/ERF domain
PROSITE profilePS5103223.3011977IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-191978IPR016177DNA-binding domain
SMARTSM003806.7E-331983IPR001471AP2/ERF domain
PRINTSPR003671.1E-92031IPR001471AP2/ERF domain
PRINTSPR003671.1E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEQQQQAAAA MAAGGGGPQY RGVRRRKWGK WVSEIRQPGT KVRIWLGSFE SAEMAAVAHD  60
VAALRLRGLD GAQLNFPGSV GWLPQPATTD PVDIRAAAAE AAERVRREPA LVAAAAAAAA  120
PGRLELGGGG GDGEFDEMES PRLWAEMAEA MLLDPPKWGP DGSDVADGSS QSWAHGSLWD  180
GC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-151781367ATERF1
3gcc_A1e-151781367ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058080.0AP005808.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0038F20.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624476.19e-83ethylene-responsive transcription factor ERF027, partial
TrEMBLA0A0E0K1661e-124A0A0E0K166_ORYPU; Uncharacterized protein
STRINGOPUNC02G18630.11e-124(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.12e-20ERF family protein