PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G18940.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 511aa    MW: 53701.9 Da    PI: 4.864
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G18940.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12320365555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++  L+el+P++      K +Ka++L + ++Y+k Lq
  OPUNC02G18940.1 320 HSIAERLRREKISDRMKDLQELVPNS-----NKTNKASMLDEIIDYVKFLQ 365
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.66E-17313376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.94E-13313369No hitNo description
PROSITE profilePS5088817.06315364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-17317375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9320365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-13321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGGFAYPFMP SPAWSRDTVF AASPWAAGGA SSLADTLVCY GDAAAAVDDE EVAFLGKTAA  60
SSPTARLHDQ LLLEAELLRQ SDGFAAMDDG ATMLAALEPC SMPLTDSAPP VICSSSSNDS  120
SGSERSAPLP AVGGFLVGDQ QHAPPAAYAA GGVPSMAAGE ETPQSFGFGS LFNGDLLQEA  180
NGSKYHHHQQ QQQQLGAVPS SQPHHLNDDI DFNTGKLLPF ASGQQQVTPS IDSLQIDQKE  240
FSSGLHHLNL SSLMSGPLAS FNATQSHRQP AEACSGKNGS AAPFVNLSEV LPNVNGSSSA  300
GNGAPKPRVR ARRGQATDPH SIAERLRREK ISDRMKDLQE LVPNSNKTNK ASMLDEIIDY  360
VKFLQLQVKV LSMSRLGAAE AVVPLLTETQ TESSGLLLSP RSSGEKQAGA GGLPGDQSEL  420
MDGGATFEQE VVKLMEDNMT TAMQYLQSKG LCLMPVALAS AISTQKGTSS AAVRPEKKNG  480
DGGGEEDDVK GEFDAPRRPP VGRPKEMRSR V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419240.0AK241924.1 Oryza sativa Japonica Group cDNA, clone: J075076G04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623831.10.0transcription factor bHLH68
TrEMBLA0A0E0K1B00.0A0A0E0K1B0_ORYPU; Uncharacterized protein
STRINGOPUNC02G18940.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32543879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-58LJRHL1-like 3