PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G21170.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 296aa    MW: 30738.1 Da    PI: 8.3879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G21170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.1e-12232277655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR ri +++ +L+el+P+     +k  s a++L +Ave+Ik Lq
  OPUNC02G21170.1 232 SIAERERRTRISEKLRKLQELVPNM----DKQTSTADMLDLAVEHIKGLQ 277
                      689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.723226276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-16229291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-13230281No hitNo description
Gene3DG3DSA:4.10.280.106.1E-15231289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10232277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MMRRFLPVGG GGVEPSSSSS TTTGGGQRGE AEAAGLRFGG GDISLGPHGG GGGGHGHQLQ  60
DGSVDLLARH SSSPAGFFSN LMASNGFPGS KGGGGSGAEA HHHHHPSMAG SGSGRKMKSQ  120
LSFTAGPPHL SHIAEDGAFP DRTGHSGAEA SVPRTFSAGG SSGGGGGGFS IVGPWEESRD  180
IISTLGYESQ FGGMASTSAL EMAGMDRYLQ LQHDQVPFKV RAKRGCATHP RSIAERERRT  240
RISEKLRKLQ ELVPNMDKQT STADMLDLAV EHIKGLQSQL QALKHEQEKC TCCSRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1108330.0AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625725.11e-154transcription factor bHLH128 isoform X1
SwissprotQ8H1024e-57BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A0E0K2370.0A0A0E0K237_ORYPU; Uncharacterized protein
STRINGOPUNC02G21170.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115313141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.16e-52bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]