PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G23010.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 214aa MW: 22045.9 Da PI: 10.8106

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G23010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	113.3	3.3e-35	57	147	8	105
TCP 8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskksq 101 +++h+kv+gR+RRvR+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt++++a ++++++ s s+s++++ +k+++ OPUNC02G23010.1 57 GKDRHSKVNGRGRRVRMPIVCAARVFQLTRELGLKSDGQTIEWLLRQAEPSILAATGTGTTPAAFVSSSAPSTSSSHQHIL-------LGKRQR 143 5899999***************************************************99999666222222222222222.......222222 PP TCP 102 ksaa 105 +++a OPUNC02G23010.1 144 QESA 147 2222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.0E-31	56	140	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.009	57	111	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSSRDAAAAA ATFHVYQPVQ IPTATVAPAA AVSAAPAEAV AQLVPAPSKK AAGAAGGKDR 60 HSKVNGRGRR VRMPIVCAAR VFQLTRELGL KSDGQTIEWL LRQAEPSILA ATGTGTTPAA 120 FVSSSAPSTS SSHQHILLGK RQRQESADAA AVSVAGAASA FWAALPAPGR PDAWGFSPLD 180 AQPTYVPMAQ AHHHHLNLLA ALSGAARRAE EESR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00655	PBM	Transfer from LOC_Os02g42380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK061568	0.0	AK061568.1 Oryza sativa Japonica Group cDNA clone:006-311-F05, full insert sequence.
GenBank	AP004067	0.0	AP004067.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1581_H09.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624938.1	2e-99	transcription factor TCP7
Swissprot	Q9FMX2	5e-40	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0E0K2S0	1e-149	A0A0E0K2S0_ORYPU; Uncharacterized protein
STRING	OPUNC02G23010.1	1e-149	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-27	TCP family protein