PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G23520.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family YABBY
Protein Properties Length: 254aa    MW: 26907.8 Da    PI: 7.9737
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G23520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY2083.4e-64182105170
            YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkee.....................lle 73 
                      s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+          +a  + + ++ ++                     l+e
  OPUNC02G23520.1  18 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLfppaP-APAPVN-QLHFGPSllsptsphglldevafqtpslLME 109
                      579********************************************99865431.222222.3444444566678889766666543332111 PP

            YABBY  74 elkveeenlksnvekeesastsvssekl......senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                      +     +++ +  +++++as+  ++  +      + +++ e+p+  p  ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaakn
  OPUNC02G23520.1 110 QASACLSSI-TGRSSSSCASNA-PA--MqmppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKN 199
                      111111111.112222222222.22..13477777888899999877678******************************************** PP

            YABBY 160 WahfPkihfgl 170
                      WahfP+ihfgl
  OPUNC02G23520.1 200 WAHFPHIHFGL 210
                      *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.2E-7019210IPR006780YABBY protein
SuperFamilySSF470954.58E-8148203IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.5E-4159202IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSSSSAVFS LDHLAAPSPT EQLCYVHCNC CDTILAVGVP CSSLFKTVTV RCGHCANLLS  60
VNLRGLLFPP APAPAPVNQL HFGPSLLSPT SPHGLLDEVA FQTPSLLMEQ ASACLSSITG  120
RSSSSCASNA PAMQMPPAKP VQQEPELPKN APASANRPPE KRQRVPSAYN RFIKDEIQRI  180
KAGNPDISHR EAFSAAAKNW AHFPHIHFGL MPDQGLKKTF KPQDGSEDIL LKDSLYAAAA  240
AAAAAAANMG VTPF
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006647599.11e-153PREDICTED: protein YABBY 4
SwissprotA2X7Q31e-151YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-151YAB4_ORYSJ; Protein YABBY 4
TrEMBLA0A0E0K2Y00.0A0A0E0K2Y0_ORYPU; Uncharacterized protein
STRINGOPUNC02G23520.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.11e-70YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]