PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G23740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 253aa    MW: 27870.7 Da    PI: 4.6538
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G23740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-1859112456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ft+eq++ Le+ F+    ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  OPUNC02G23740.1  59 KRRFTEEQVRSLETTFHArRAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 112
                      458**************8899********************************9 PP
2HD-ZIP_I/II123.11.3e-3957150193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kq+E+dy+aL+++ydal+++ ++L++e+ +L+++++e
  OPUNC02G23740.1  57 ERKRRFTEEQVRSLETTFHARRaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVDSLKQEKLALAAQVDE 150
                      69*****************9999******************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.05E-1749115IPR009057Homeodomain-like
PROSITE profilePS5007117.21653114IPR001356Homeobox domain
SMARTSM003892.9E-1756118IPR001356Homeobox domain
PfamPF000461.5E-1559112IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1859121IPR009057Homeodomain-like
CDDcd000868.84E-1662115No hitNo description
PRINTSPR000316.2E-78594IPR000047Helix-turn-helix motif
PROSITE patternPS00027089112IPR017970Homeobox, conserved site
PRINTSPR000316.2E-794110IPR000047Helix-turn-helix motif
PfamPF021831.3E-16114155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MESDCQFLLA PPPQPHMYYD TAATADEAQF LRQMVAAADH HAAAAGRGGG DGGGGGERKR  60
RFTEEQVRSL ETTFHARRAK LEPREKAELA RELGLQPRQV AIWFQNKRAR WRSKQIEHDY  120
AALRAQYDAL HARVDSLKQE KLALAAQVDE LRGKLNERQD QSGSSCDGGA EGDDDDKRNS  180
VNASSSGLVE EDVSCLAVPV VDVSEDGSAA CGGSSYEYDH HLDYLDGGQL PDPFCAMPDL  240
WETWPLVEWN AVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0636850.0AK063685.1 Oryza sativa Japonica Group cDNA clone:001-119-F01, full insert sequence.
GenBankEU8475150.0EU847515.1 Oryza sativa Japonica Group clone OsHD6B homeobox leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624138.11e-140homeobox-leucine zipper protein HOX24
SwissprotA2X7U11e-143HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBLA0A0E0K3020.0A0A0E0K302_ORYPU; Uncharacterized protein
STRINGOPUNC02G23740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.16e-34homeobox 7