PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G24320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 620aa    MW: 65325.1 Da    PI: 6.0985
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G24320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05120137219
                      EETTTTEEESSHHHHHHH CS
          zf-C2H2   2 kCpdCgksFsrksnLkrH 19 
                      +C++Cgk F+++ +L  H
  OPUNC02G24320.1 120 TCENCGKEFTSWKTLLDH 137
                      6***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.23658IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.03E-63658No hitNo description
PfamPF139128.5E-53658IPR007087Zinc finger, C2H2
PROSITE profilePS501578.7043658IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SuperFamilySSF576674.03E-6114139No hitNo description
PROSITE profilePS501578.6119146IPR007087Zinc finger, C2H2
SMARTSM00355200119139IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.96E-8297320No hitNo description
SMARTSM003550.13298320IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221298325IPR007087Zinc finger, C2H2
PfamPF139125.1E-9298322IPR007087Zinc finger, C2H2
PROSITE patternPS000280300320IPR007087Zinc finger, C2H2
SuperFamilySSF576677.96E-8430457No hitNo description
PfamPF139121.9E-12434458IPR007087Zinc finger, C2H2
SMARTSM003550.46435457IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349435457IPR007087Zinc finger, C2H2
PROSITE patternPS000280437457IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAMVVAGSHR PPSPQSLRLV PPPPPQPPPP PLAYKHHCKV CKKGFMCGRA LGGHMRAHGI  60
GDDNDTMDDD DDDHSLSPCG DGGGEPSEAA GSPTTTTTTT TTKSMYALRT NPGRPRNCRT  120
CENCGKEFTS WKTLLDHGRC GFDEEDARLD VSLIRSPPLH DGGDDNDGED EEGDDLTLAA  180
GGWSKGKRSR RAKVMAIGTG SVSELQLPAP STEEEDLANF LVMLSSSSSS SSRVAQPAIV  240
VDDADQESCA SGSKDEERNR FFVPQPISIA APMMAQMTVI APQMVPQQHI STVPRGMFEC  300
KACKKVFTSH QALGGHRASH KKVKGCFAAK LESSRNETAT EAQQQHVTAA PHDDTRATTS  360
HVIPGDISMD GANTIGASAD ADGKAAAASV GAGEIVIAEA ASTDMTAMMM PVEDLAPASL  420
APSGVLPFKK KGKVHECSIC HRVFTSGQAL GGHKRCHWLT SGATDPLTKL QPVAQDHAMV  480
AAMCHQLTLG RPIFDAIDQR ILDLNVPANP LAEAVAARQQ QQVAAVNDGA LSLNAAASVY  540
LQSWTGHSNG SHVNKTTATG SRINDAAGGA TTEDDEADST SAKRAKIGDL KDMKVAGESL  600
PWLQVGIGIS SESKEKNTQE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075590.0AK107559.1 Oryza sativa Japonica Group cDNA clone:002-130-B07, full insert sequence.
GenBankAP0050720.0AP005072.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0708H12.
GenBankAP0052890.0AP005289.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1112_F09.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624902.10.0uncharacterized protein LOC4330215
TrEMBLA0A0E0K3680.0A0A0E0K368_ORYPU; Uncharacterized protein
STRINGOPUNC02G24320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35243262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-12C2H2-like zinc finger protein