PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G24500.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 713aa    MW: 74367 Da    PI: 5.8999
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G24500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.91.5e-853557123374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L ++A+a ++g+   a+++Larl+++  p g+p+ R a+y+ eAL   la+s +++++      ts+ +++ +laa+k fs++sP+l+f+++
  OPUNC02G24500.1 355 DELAAAAKATEAGNSVGAREILARLNQQLPPLGKPFLRSASYLREALLLALADSHHGVSS-----VTSPLDVALKLAAYKSFSDLSPVLQFANF 443
                      7899*************************************************6666664.....344445889******************** PP

             GRAS  97 taNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                      ta qa+l+++ g   +++H+iDfd++ G+QW+++lq+La R        p l++T+++s +s++  el  t+++L++fA+ lg+pfefn+l   
  OPUNC02G24500.1 444 TATQALLDEIGGTatSCIHVIDFDLGVGGQWASFLQELAHRCaaggVTFPLLKLTAFVSTASHHPLELYLTQDNLSQFAADLGIPFEFNAL--- 534
                      ************98899************************976444489***********9****************************9... PP

             GRAS 185 rledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      +l+++++ eL  ++ +E++aV+l +          +     +++L+lvk+lsPk+vv +++ ad+ + sF ++fl++++ ++ l+dsl+a  + 
  OPUNC02G24500.1 535 SLDAFNPGELISSTgDEVVAVSLPVGCSARA---PP----LPAILRLVKQLSPKIVVAIDHGADRADLSFSQHFLNCFQSCVFLLDSLDAA-GI 620
                      9*********888889********9777665...44....556*********************************************888.78 PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      +++ + k+Er+l+++++ ++v  ++++      ++  Wr+ + +aGFkpvp s+  ++qa++ll++v+++g++ve++ ++l+l+W++ +Lvs+S
  OPUNC02G24500.1 621 DADSACKIERFLIQPRVHDMVLGRHKA-----HKAIAWRSVFAAAGFKPVPPSNLSEAQADCLLKRVQVRGFHVEKRGAALTLYWQRGELVSIS 709
                      99********************99998.....55889********************************************************* PP

             GRAS 372 aWr 374
                      +Wr
  OPUNC02G24500.1 710 SWR 712
                      **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.956327692IPR005202Transcription factor GRAS
PfamPF035145.3E-83355712IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 713 aa     Download sequence    Send to blast
MRAALFGAER SGVVDHGGGD KEELFWPARK GELLVVEPRS VLDCTRSPSP RNSTSTLSSS  60
QGGGGADSTV VAAVSESSAA AAEATKWGAP GEHGGGGGGG GGGKEDWSGG CELPPIPGTL  120
DVGLVGGEGW DTMLGNAAAA AAGQDQSFLN WIIGAAGDLE QPGPPLIDNA GFGIPAVDPL  180
GFSLDHSLSG VASDLSSTGA HTATGGGGGG KASLGFGLFS PEATSLEQPP SPMLFHEGID  240
TKPPLLGAQP PGLLNHYQHQ QPNPATTFLM PHPSFPEHNH QSPLLQPPPK RHNSMSDDLY  300
LARNQLPPPA AAAAQGLPYS PLHASVPFQL QPSPPPTRGA MKTTAAEAAQ QQLLDELAAA  360
AKATEAGNSV GAREILARLN QQLPPLGKPF LRSASYLREA LLLALADSHH GVSSVTSPLD  420
VALKLAAYKS FSDLSPVLQF ANFTATQALL DEIGGTATSC IHVIDFDLGV GGQWASFLQE  480
LAHRCAAGGV TFPLLKLTAF VSTASHHPLE LYLTQDNLSQ FAADLGIPFE FNALSLDAFN  540
PGELISSTGD EVVAVSLPVG CSARAPPLPA ILRLVKQLSP KIVVAIDHGA DRADLSFSQH  600
FLNCFQSCVF LLDSLDAAGI DADSACKIER FLIQPRVHDM VLGRHKAHKA IAWRSVFAAA  660
GFKPVPPSNL SEAQADCLLK RVQVRGFHVE KRGAALTLYW QRGELVSISS WRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2542871280375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627071.10.0scarecrow-like protein 6
TrEMBLA0A0E0K3910.0A0A0E0K391_ORYPU; Uncharacterized protein
STRINGOPUNC02G24500.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20203796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-93GRAS family protein