PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G25510.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 418aa    MW: 44799.5 Da    PI: 7.899
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G25510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.6e-07109130426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++Cr+f++ G C+yG++C++ H+
  OPUNC02G25510.1 109 RPCRYFLA-GDCSYGEKCRYPHS 130
                      79******.***********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.8262854IPR000571Zinc finger, CCCH-type
SMARTSM003560.572953IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315105132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012107131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5107130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5109130IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-4109130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509781.65E-36136321IPR017986WD40-repeat-containing domain
SMARTSM003207.3E-6136175IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.0E-35138398IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004001.2E-5140175IPR001680WD40 repeat
PROSITE profilePS5029415.426143305IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.118143184IPR001680WD40 repeat
PRINTSPR003201.8E-6162176IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780162176IPR019775WD40 repeat, conserved site
SMARTSM003204.9215252IPR001680WD40 repeat
SMARTSM003200.0019259296IPR001680WD40 repeat
PfamPF004000.014264296IPR001680WD40 repeat
PROSITE profilePS5008211.511266305IPR001680WD40 repeat
PROSITE patternPS006780283297IPR019775WD40 repeat, conserved site
PRINTSPR003201.8E-6283297IPR020472G-protein beta WD-40 repeat
SMARTSM003202299362IPR001680WD40 repeat
SuperFamilySSF509781.65E-36348399IPR017986WD40-repeat-containing domain
PRINTSPR003201.8E-6349363IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MDIETDGRFG NKRVHHRLGP ANGAASSSTS GKVCIHWRAG RCNRFPCPYL HSELPEATTK  60
RPSHGGGGGN VWRNPHSGGG GGRGGGGPNK WGRGPGGADG GPRQKVPDRP CRYFLAGDCS  120
YGEKCRYPHS YSMSDSITML TPLQGHEKVV TGIALPAGSD KLYSGSKDGT VRMWDCQTGQ  180
CAGVINMGRE IGCMISEGPW LFVGIPDAVK VWNMQTQAEM NLTGPTGQVY ALAVGNELLF  240
AATQDGRILA WRFSAATNGF EPAASLVGHQ LAVVSLVVGA MRLYSGSMDK TIRVWDMATL  300
QCIQTLSDHT GVVWAATESG SLEVTYTHKE EHGALALSGM PDAQSKPVLL CSLNDNTVRL  360
YDLPSFSDRG RIFSKQEIRA IQVGPGGLFF TGDGTGELKP EEQYTTTPQT QTSDYVRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A1e-151403138258Tako8
6g6n_A1e-151403138258Tako8
6g6n_B1e-151403138258Tako8
6g6n_C1e-151403138258Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1023240.0AK102324.1 Oryza sativa Japonica Group cDNA clone:J033090J15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627227.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0E0K3K70.0A0A0E0K3K7_ORYPU; Uncharacterized protein
STRINGOPUNC02G25510.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-167C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]