PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G26490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 360aa    MW: 38092.3 Da    PI: 7.024
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G26490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.47.9e-29202251251
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ
  OPUNC02G26490.1 202 PRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 251
                      9************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-25200251IPR009057Homeodomain-like
SuperFamilySSF466892.15E-13200252IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-20202252IPR006447Myb domain, plants
PfamPF002491.7E-6203252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MELFPAHPDL QLQISPPPAT KSMDLGFWKR ALETSTTTTT AAAAATTVAS TAPSIATSSS  60
SPVASGGVGT GAGAGGFYQQ AAVAPAANGH GHHHHHHNHH QLGGALQFLH RTQPIPPQDA  120
AGGVGGVGGL QDLAFARPIR GIPVYNTSRP LPFLQSHHLQ HHQHCYADAI GVSTGAGPRS  180
PSKQAAALRL AAAPAKRGAR APRMRWTTSL HARFVHAVEL LGGHERATPK SVLELMDVKD  240
LTLAHVKSHL QTIIEIPDDN LFDINNTSGS ESSVQQQSNL DGNEQGSNMC ALWSNNSSSR  300
GAWLHDKSRD ATPGDIKSFE DVQSQSPEDD DASDLNSPPF QIPETVSAMK PNLDFTLGRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-14203251351Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-14203251452Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0058590.0AP005859.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1053A04.
GenBankAP0058680.0AP005868.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0666E12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623606.11e-161probable transcription factor KAN2 isoform X1
TrEMBLA0A0E0K3X80.0A0A0E0K3X8_ORYPU; Uncharacterized protein
STRINGOPUNC02G26490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94383445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17695.11e-30G2-like family protein