PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G26570.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 494aa MW: 50717.6 Da PI: 6.5835

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G26570.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.6	8.3e-31	235	293	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ OPUNC02G26570.1 235 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 293 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.0E-31	229	295	IPR003657	WRKY domain
PROSITE profile	PS50811	33.109	229	295	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-26	232	295	IPR003657	WRKY domain
SMART	SM00774	1.4E-37	234	294	IPR003657	WRKY domain
Pfam	PF03106	1.1E-25	236	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 494 aa Download sequence Send to blast
MCDYFLQRME GEQAAGDLAD IVRAGGSAAA VGGGGGGSIP STASTEWQLP PAEEDPGRLF 60 PLPPSSSDGS GMSGADAFGD PFAGLPDPFG GDYPSSSAGA ADFFDAVVAK AGFVDVGVLG 120 GGSCDGGGVD GGGGGSLLGM RKPILPRGAM QMPSVSPRAI RPYPVMASDA VKLGAPMAGG 180 PCAFVDGAAA AGLHMSSSPR AGGGIKRRKN QARKVVCIPA PAAAGGRTSG EVVPSDLWAW 240 RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA 300 LAGSTRSHHA KNSSSSSSSA SSASKNNSSH SCYHHQTKPL VKAEPNDQSA AAATTTASTV 360 PVKAEAAMVG SSEALAVKQK SMEDAAASSA TAAAAVVEHS DLMQQMFSQS YRPMIPEAAG 420 GHHDDFFADL AELESDPMSL IFSKEYMATK PAGDPGKEMN AIDKDLDPAY MLDWSTTVIT 480 RAGGSSFMQG EGGL

Sequence ? help Back to Top

Protein Sequence Length: 494 aa Download sequence Send to blast

MCDYFLQRME GEQAAGDLAD IVRAGGSAAA VGGGGGGSIP STASTEWQLP PAEEDPGRLF  60
PLPPSSSDGS GMSGADAFGD PFAGLPDPFG GDYPSSSAGA ADFFDAVVAK AGFVDVGVLG  120
GGSCDGGGVD GGGGGSLLGM RKPILPRGAM QMPSVSPRAI RPYPVMASDA VKLGAPMAGG  180
PCAFVDGAAA AGLHMSSSPR AGGGIKRRKN QARKVVCIPA PAAAGGRTSG EVVPSDLWAW  240
RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA  300
LAGSTRSHHA KNSSSSSSSA SSASKNNSSH SCYHHQTKPL VKAEPNDQSA AAATTTASTV  360
PVKAEAAMVG SSEALAVKQK SMEDAAASSA TAAAAVVEHS DLMQQMFSQS YRPMIPEAAG  420
GHHDDFFADL AELESDPMSL IFSKEYMATK PAGDPGKEMN AIDKDLDPAY MLDWSTTVIT  480
RAGGSSFMQG EGGL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	4e-25	209	296	2	80	Disease resistance protein RRS1
5w3x_D	4e-25	209	296	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073100	0.0	AK073100.1 Oryza sativa Japonica Group cDNA clone:J033016K09, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624748.1	0.0	probable WRKY transcription factor 14
Swissprot	O64747	6e-74	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	A0A0E0K3Y7	0.0	A0A0E0K3Y7_ORYPU; Uncharacterized protein
STRING	OPUNC02G26570.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	2e-70	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]