PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G27080.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 343aa    MW: 36824.5 Da    PI: 7.9962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G27080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.42.9e-09165212455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR+ri +++  L+el+P +    +k   Ka +L + ++Y++sLq
  OPUNC02G27080.1 165 SHSLAERVRRERISERMRYLQELVPGC----NKVTGKAGMLDEIINYVQSLQ 212
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.28E-10159216No hitNo description
SuperFamilySSF474599.16E-17159228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-16161223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAQCGGGDVS RHRKGHLDTV ESLCQGLLDD VMLDDDKCRA MFGYLQEWQD LSSMCYGSLG  60
GEPPLAPEAS NGSGGFRKRR PDEAKGESNS VCKRPREKQQ QQPRHPDQMA AVGKGRPERA  120
RPGAKKKAEV ASPKDSPATS ASTVTAGQKT DYIHVRARRG QATDSHSLAE RVRRERISER  180
MRYLQELVPG CNKVTGKAGM LDEIINYVQS LQKQVEFLSM KIAASNPVVN FNIVEDLFGR  240
QLSQAACNPA ALQAMTLPMG QVEPSCLQMS PLQQMQTSAG SSGYGLEMVV SNQYSPAPGG  300
PMSAAAVMSV SASASVNGAA GWDIGSHGLF SGFDAPFQSV QSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1191830.0AK119183.1 Oryza sativa Japonica Group cDNA clone:001-038-D03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627481.10.0transcription factor bHLH63
TrEMBLA0A0E0K4630.0A0A0E0K463_ORYPU; Uncharacterized protein
STRINGOPUNC02G27080.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.12e-41cryptochrome-interacting basic-helix-loop-helix 1