PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G27370.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 272aa    MW: 27812.3 Da    PI: 9.3515
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G27370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-09185226955
                      HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++RR+ri +++  L+el+P+      +K++ +++LekA+ Y+k Lq
  OPUNC02G27370.1 185 AKNRRERISERLRILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 226
                      69******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.091176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-11177234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13178236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-12178230No hitNo description
SMARTSM003532.0E-11182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-7185226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALVRERAMV YGGGFDAEAF GGGFESQSQM GYGHGALLDI DAAAMFGGYE AAGALVQDGA  60
GWAAAGAASS SYGAGGEAAP YRSTTAAVAF DAATGCFSLT ERTTGGSGAG GRQFGLLFPS  120
TSGGGGSPER AAPAPAPRGS QKRAHAESSQ AMSPSKKQCG GAGRKAGKAK SAPTTPTKDP  180
QSLAAKNRRE RISERLRILQ ELVPNGTKVD LVTMLEKAIS YVKFLQLQVK VLATDEFWPA  240
QGGKAPEISQ VKEALDAILS STSSPLMGQL MN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1096620.0AK109662.1 Oryza sativa Japonica Group cDNA clone:002-143-H06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624282.11e-146putative transcription factor bHLH086
TrEMBLA0A0E0K4990.0A0A0E0K499_ORYPU; Uncharacterized protein
STRINGOPUNC02G27370.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141238117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.14e-40ROOT HAIR DEFECTIVE6