PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G28490.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NF-YB

Protein Properties

Length: 182aa MW: 19550.9 Da PI: 7.5877

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G28490.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	134	4.6e-42	29	120	5	96
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + +lP+an++r+mkkvlP++aki+ +ak+++++c++ef++fv++eas+k+++e+r+ti+++d+l ++++lGf++y+ep+++y++ yre+e++ OPUNC02G28490.1 29 NTELPMANLIRLMKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTIAPEDYLGSFGDLGFDRYIEPMEAYIHGYREFERA 120 789**************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-26	26	120	IPR009072	Histone-fold
Pfam	PF00808	1.3E-13	30	90	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	8.0E-24	31	146	IPR009072	Histone-fold
PRINTS	PR00615	4.0E-6	59	77	No hit	No description
PRINTS	PR00615	4.0E-6	78	96	No hit	No description
PRINTS	PR00615	4.0E-6	97	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MAGNKKRGGR NMEVQKKAAG SDGEGGVTNT ELPMANLIRL MKKVLPGKAK IGGAAKGLTH 60 DCAVEFVGFV GDEASEKAKA EHRRTIAPED YLGSFGDLGF DRYIEPMEAY IHGYREFERA 120 GGNRRVVPTA ATTPLTPSGP TFTDAELQFL RSVIPSISDD EYNGSSSAKD GYGYGYGYGK 180 NM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-25	32	116	13	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May act through association with MADS-box proteins. May regulate the expression of genes involved in flowering. {ECO:0000269\|PubMed:11971906}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ300218	0.0	AJ300218.1 Oryza sativa nf-yb1 gene and nf-YB1 gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624776.1	3e-92	nuclear transcription factor Y subunit B-1
Swissprot	Q6Z348	3e-93	NFYB1_ORYSJ; Nuclear transcription factor Y subunit B-1
TrEMBL	A0A0E0K4P7	1e-130	A0A0E0K4P7_ORYPU; Uncharacterized protein
STRING	OPUNC02G28490.1	1e-131	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13659	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	2e-22	nuclear factor Y, subunit B6