PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G29000.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 26218.6 Da    PI: 9.1544
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G29000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.49.1e-291059251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +++fsstg+lye+ss
  OPUNC02G29000.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSS 59
                     8***********************************************96 PP
2K-box523e-18781391071
            K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                        + +++ ++e+a L+++++nLq+++++l+Ge+L+ L +++Lq Le++Le sl++iR +K +
  OPUNC02G29000.1  78 GGNATSEIKREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKAN 139
                      55678899****************************************************74 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.17161IPR002100Transcription factor, MADS-box
SMARTSM004327.9E-40160IPR002100Transcription factor, MADS-box
CDDcd002652.08E-43277No hitNo description
SuperFamilySSF554555.89E-32274IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.1E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004046.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1781171IPR002487Transcription factor, K-box
PROSITE profilePS5129711.56582177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLVVFSS TGRLYEFSST  60
NMKTVIDRYT NAKEELLGGN ATSEIKREAA SLRQQLHNLQ ESHKQLMGEE LSGLGVRDLQ  120
GLENRLEISL RNIRMRKAND DTGSLIHQEN VELSRSLNVM SQQKLELYNK LQACEQRGAT  180
DANESSSTPY SFRIIQNTNI PPSLEMSQSQ QKEGECNKTD APELGLSDSI ATKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-21174174MEF2C
5f28_B1e-21174174MEF2C
5f28_C1e-21174174MEF2C
5f28_D1e-21174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8353720.0CT835372.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI222G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626795.11e-151MADS-box transcription factor 57 isoform X2
SwissprotQ6Z6W21e-152MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A0E0K4V21e-170A0A0E0K4V2_ORYPU; Uncharacterized protein
STRINGOPUNC02G29000.11e-171(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.15e-77AGAMOUS-like 16
Publications ? help Back to Top
  1. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  2. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  3. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  4. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]