PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G29870.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 200aa MW: 23316 Da PI: 9.7409

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G29870.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.4	2.1e-26	81	131	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k ++++ +s+yF +pik+AA+eL+v+lT+LKr+CR +GI+RWPhRk+ksl OPUNC02G29870.1 81 KKPLTFKLVSQYFCMPIKQAAQELNVGLTLLKRRCRVLGIPRWPHRKVKSL 131 6889*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.201	62	152	IPR003035	RWP-RK domain
Pfam	PF02042	6.2E-22	84	131	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MYPPLSPYQW KSGAFTKRTS FSIGDELYTL FDGDILSIWG DVEEHHKSDK DSGEKEQRLE 60 REKAMELQVQ RLPSSRGSGE KKPLTFKLVS QYFCMPIKQA AQELNVGLTL LKRRCRVLGI 120 PRWPHRKVKS LETLIKNVQE LGMETGQDEN KIMNAVEMLQ QTKKLIEQSP DAKLDDWIKM 180 LRQACFKENY KRRRLLTIEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	194	KRRRL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	2e-95	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627113.1	1e-107	protein RKD1
Refseq	XP_015627115.1	1e-107	protein RKD1
TrEMBL	A0A0E0K568	1e-146	A0A0E0K568_ORYPU; Uncharacterized protein
STRING	OPUNC02G29870.1	1e-147	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-41	RWP-RK domain-containing protein