PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G31100.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 245aa    MW: 26437.6 Da    PI: 6.3628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G31100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-21123173155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GVr+++ +g+W+AeIrdp     +   r +lg+f+tae+Aa+a++aa+++++g
  OPUNC02G31100.1 123 SRYRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDAAALEFRG 173
                      79********.**********7.....338*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.03E-23123183IPR016177DNA-binding domain
PfamPF008471.3E-13123173IPR001471AP2/ERF domain
SMARTSM003802.6E-36124187IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-32124182IPR001471AP2/ERF domain
PROSITE profilePS5103225.673124181IPR001471AP2/ERF domain
CDDcd000181.14E-18125183No hitNo description
PRINTSPR003673.6E-11125136IPR001471AP2/ERF domain
PRINTSPR003673.6E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MVPRLERGGA GFHLPNSEQE DSLFIRALIS VVSGDTTVPT LLPEPEPTTT MMTTVVAGAA  60
PCSRCGVDGC IGVDCEVVVL AAAGSSSSDE EDEEECLGAA ASGGVTGRVG KRRRRRRSGG  120
EGSRYRGVRR RPWGKWAAEI RDPHRAVRKW LGTFDTAEDA ARAYDAAALE FRGQRAKLNF  180
PASTAAQQPR PLHYSLRENC GSNASSPVHA TEHERPAAAA AKDQEIWDGL REIMMLDDGS  240
FWSMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-21119181972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107116RVGKRRRRRR
2110115KRRRRR
3110116KRRRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624274.11e-147ethylene-responsive transcription factor ERF109
TrEMBLA0A0E0K5L81e-178A0A0E0K5L8_ORYPU; Uncharacterized protein
STRINGOPUNC02G31100.11e-179(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.11e-15ERF family protein