PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G33090.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 682aa    MW: 73746.2 Da    PI: 7.0948
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G33090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.12.2e-19214257145
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                      kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+ Lt+e+
  OPUNC02G33090.1 214 KPRVVWSVELHRKFVSAVNQL-GIDKAVPKRILELMNVEKLTREN 257
                      79*******************.********************987 PP
2Response_reg76.59.6e-26261341109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ +++l+++l + +y +v+++ ++  al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++l+ +  
  OPUNC02G33090.1  26 VLAVDDDPVCLKVLETLLLRCQY-HVTTTNQAAIALKMLRENRdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVLKGITH 117
                      799********************.***************99999********************87754.558********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l Kp+ +eel++
  OPUNC02G33090.1 118 GACDYLLKPVRIEELRN 134
                      ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.2E-1941682IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.2E-4023177No hitNo description
SuperFamilySSF521723.27E-3423148IPR011006CheY-like superfamily
SMARTSM004483.6E-3024136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41625140IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.5E-2326135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.59E-2627140No hitNo description
Gene3DG3DSA:1.10.10.607.0E-20212265IPR009057Homeodomain-like
SuperFamilySSF466898.96E-12212265IPR009057Homeodomain-like
TIGRFAMsTIGR015573.2E-16214257IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MRAAEERKGV VVAARRRDQF PVGMRVLAVD DDPVCLKVLE TLLLRCQYHV TTTNQAAIAL  60
KMLRENRDMF DLVISDVHMP DMDGFKLLEL VGLEMDLPVI MLSVNGETKT VLKGITHGAC  120
DYLLKPVRIE ELRNIWQHVI RRKFSTRDRA NIDFYEECNK PPNADSDHVH GHVTCGSPDQ  180
SGRSSKKRKE HYSEDEDEGE VNAQDIDDPS APKKPRVVWS VELHRKFVSA VNQLGIDKAV  240
PKRILELMNV EKLTRENKYR LYLKRLSAVA SQQVSIVAAL GGRDPFLHMG GFEGLQGYQA  300
FTSSAALSSF TPHGLLNSPR NNPGALGTQG VPASKSIQTV SGNHTLSHSI SDPNKYRLSL  360
PGNQQGNSGQ GLATSLGQTQ MQQKWIHKET DDLSTILSGN GLANGMSGTL QSVTSSPLLP  420
QELAECTQAK IGSQPSIRTS SVSSECIEGA VGVSSGLLES RVSQQSTIPL SGFSANGLLI  480
HGSFNNTCAT KLGGTSSSCT PARSSNDLMV ARDAKGGASS FGGAMLLPPD TEQKYLNFGG  540
GNSLKQKFDE RTADSLFDPK LIWSSVPSSQ FASNIGAHHA MSQRWNNSSS NSSYIGARMI  600
GQATSSGSTV IPQMKTDFLV SGDTLMPKNA SDLSIPKLQS ELSSSSCSFD GLLNSIVKVE  660
KDDVTFSDDL GCSDFYSLGA CI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-18210267164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0995810.0AK099581.1 Oryza sativa Japonica Group cDNA clone:J013040N16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015625496.10.0two-component response regulator ORR23
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A0E0K6B20.0A0A0E0K6B2_ORYPU; Two-component response regulator
STRINGOPUNC02G33090.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-97response regulator 12