PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G33630.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 348aa    MW: 39249.3 Da    PI: 7.0194
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G33630.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.12.4e-1658104455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       hn  E+rRR+riN+++  L++l+P++      K +Ka++L  A+eY+k+Lq
  OPUNC02G33630.1  58 VHNLSEKRRRSRINEKMKALQSLIPNS-----SKTDKASMLDDAIEYLKQLQ 104
                      6*************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-2051115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-2052114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.12754103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-1557108No hitNo description
PfamPF000106.9E-1458104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-1960109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009409Biological Processresponse to cold
GO:0010114Biological Processresponse to red light
GO:0010154Biological Processfruit development
GO:0010187Biological Processnegative regulation of seed germination
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDGHGRGREE EEHLDLIMRH HGSMGLDRCE SEEALGSSES EPTRPARPRG KRSRAAEVHN  60
LSEKRRRSRI NEKMKALQSL IPNSSKTDKA SMLDDAIEYL KQLQLQVQML SMRNGIYVPP  120
VNLSGAPEHL PIPQMSAALD QNSAKASNPS VVLQPVNQIS GAHLPFELAN QHKPLFLPGV  180
PNATAPEHGF LVESSRSNLQ SLRFTESAEM IYPDEMMLKH RLTSANESTT VPGTDAKSVR  240
QDTYMMNADR FDRYALSKDQ LHHIMPKNTE NYKLTMQLPI LDRMQTRDTE VRVEGRIKLN  300
AEQTMVIGLS EKYLNDNVGS SNISSGREFD TLLGHRDDNW NAKQFKDL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00035PBMTransfer from AT4G36930Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-132CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627242.10.0transcription factor SPATULA isoform X1
RefseqXP_015627243.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0K6I60.0A0A0E0K6I6_ORYPU; Uncharacterized protein
STRINGOPUNC02G33630.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33363776
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-34bHLH family protein