PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G34240.3

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 790aa MW: 87545.4 Da PI: 6.032

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G34240.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77.6	1.5e-24	653	697	1	45
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr+rWtpeLHerFv+av++LGGsekAtPk++ ++mkv+gLt++h OPUNC02G34240.3 653 KPRMRWTPELHERFVDAVNKLGGSEKATPKAVQKVMKVEGLTIYH 697 79*****************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11107	1.6E-45	10	220	No hit	No description
Pfam	PF11107	4.4E-16	228	353	No hit	No description
SuperFamily	SSF46689	4.66E-10	650	697	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-21	652	697	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-16	653	696	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-6	655	695	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-17	719	761	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 790 aa Download sequence Send to blast
MGWAHETVAM EELLGLVRGF VDVLVLAGGH TSSGAAATWR SGDVKKALQW ALFFEEVFKN 60 LRDNGQYDGS ARELDAALVQ LTSSPNFPKG IEDIRSKTLS TARYLVVKHF LKTTSVENLG 120 AVLQAVVEMD MDGISASSER NVCQEYVQSI LDTNLPSLMR TKNARDVGHS TSSDEFCEES 180 LFMGNSQILL KELQKNLDSG SCISLAEKGL STLLKSMKKN SFGGAGSTSC TPATAQKAQI 240 VDKFILWKQW RAKCLSYLLD ERTIRIMSGA NLIFNAPKEQ WMGLFEPLKD SSQSGIVEVM 300 ELCLLGLVAR QWNSLIESFM SHTFSSFPIS KQYADLHQLL QGTTQDECQD KLLGFKEMDI 360 CEYATQSLES EPYILWLLPP VLTAAAMPPR SSLFKKYLVE IDKQLSEAAS KDRPTSTMNQ 420 LRNGKVPRYL SPAITVVPAL SEVAFPSFSE HRPSYIEREQ CGSSINSFDA STPMCMLASN 480 FTSDLYINNS ELPNGKLSSE SYAIDTSGCD SSLLPTQSLY KGNPSSLRMV YPKVSEQNSW 540 SQEPLPGPFV CPTSVDFFDQ QDMAIFDQQI QDNIAASPST NLAKQNEWFS SGTSLQYLES 600 SVSAGSVLKA VDATSTTPSN YPHCHAQRNT SNPPNFNELC SDNIASSNIA PTKPRMRWTP 660 ELHERFVDAV NKLGGSEKAT PKAVQKVMKV EGLTIYHKYR TVHHRPELSD GRGMETTCEG 720 LRVQIGLQKQ LHEQLEIQRK LQLQVEEHSK YLAMIIAKQS ESLRQLGALP RSLDAPTQCQ 780 KLQAEAVLNC

Sequence ? help Back to Top

Protein Sequence Length: 790 aa Download sequence Send to blast

MGWAHETVAM EELLGLVRGF VDVLVLAGGH TSSGAAATWR SGDVKKALQW ALFFEEVFKN  60
LRDNGQYDGS ARELDAALVQ LTSSPNFPKG IEDIRSKTLS TARYLVVKHF LKTTSVENLG  120
AVLQAVVEMD MDGISASSER NVCQEYVQSI LDTNLPSLMR TKNARDVGHS TSSDEFCEES  180
LFMGNSQILL KELQKNLDSG SCISLAEKGL STLLKSMKKN SFGGAGSTSC TPATAQKAQI  240
VDKFILWKQW RAKCLSYLLD ERTIRIMSGA NLIFNAPKEQ WMGLFEPLKD SSQSGIVEVM  300
ELCLLGLVAR QWNSLIESFM SHTFSSFPIS KQYADLHQLL QGTTQDECQD KLLGFKEMDI  360
CEYATQSLES EPYILWLLPP VLTAAAMPPR SSLFKKYLVE IDKQLSEAAS KDRPTSTMNQ  420
LRNGKVPRYL SPAITVVPAL SEVAFPSFSE HRPSYIEREQ CGSSINSFDA STPMCMLASN  480
FTSDLYINNS ELPNGKLSSE SYAIDTSGCD SSLLPTQSLY KGNPSSLRMV YPKVSEQNSW  540
SQEPLPGPFV CPTSVDFFDQ QDMAIFDQQI QDNIAASPST NLAKQNEWFS SGTSLQYLES  600
SVSAGSVLKA VDATSTTPSN YPHCHAQRNT SNPPNFNELC SDNIASSNIA PTKPRMRWTP  660
ELHERFVDAV NKLGGSEKAT PKAVQKVMKV EGLTIYHKYR TVHHRPELSD GRGMETTCEG  720
LRVQIGLQKQ LHEQLEIQRK LQLQVEEHSK YLAMIIAKQS ESLRQLGALP RSLDAPTQCQ  780
KLQAEAVLNC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-21	653	705	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK066382	0.0	AK066382.1 Oryza sativa Japonica Group cDNA clone:J013064K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627299.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627301.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_015627302.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878774.1	0.0	uncharacterized protein LOC4331121
Refseq	XP_025878775.1	0.0	uncharacterized protein LOC4331121
TrEMBL	A0A0E0K6T0	0.0	A0A0E0K6T0_ORYPU; Uncharacterized protein
STRING	OPUNC02G34240.5	0.0	(Oryza punctata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28610.1	4e-38	phosphate starvation response 1