PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G35060.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 328aa    MW: 34319.1 Da    PI: 8.2321
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G35060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.20.00055116138123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+k+F++   L  H  +H
  OPUNC02G35060.1 116 YECKTCNKCFPTFQALGGHRASH 138
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-8115138No hitNo description
PfamPF139121.9E-11115140IPR007087Zinc finger, C2H2
SMARTSM003550.094116138IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097116143IPR007087Zinc finger, C2H2
PROSITE patternPS000280118138IPR007087Zinc finger, C2H2
SuperFamilySSF576671.56E-8212239No hitNo description
PfamPF139129.1E-13216240IPR007087Zinc finger, C2H2
SMARTSM003550.026217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.349217239IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSVEDKHHLA AGVVKRKRTK RPRHHAAPAS SSESTTTEEE DMAHCLILLA QGAAVVDSKP  60
STPAPPPPPP PAQPPVLAAP APPPPAVVVK SERYTSRKYT EAATTADGVR AGFYVYECKT  120
CNKCFPTFQA LGGHRASHKK PRLAGADDDN ANATTNTNTN AIVVKSKPPL MTAPSPPSPP  180
PPQADAALCS VVVPDVTTVL SLNNVAASSM INKLRVHECS ICGAEFGSGQ ALGGHMRRHR  240
PLHAPPERAV TMATTTTAPD TKKAGSTSIN LELDLNLPAP SDEESVSPPP PPPPPPPPVL  300
LALDGQFDDG KKPILQLTTS AALVGCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039890.0AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040260.0AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623775.11e-140zinc finger protein ZAT5
TrEMBLA0A0E0K7390.0A0A0E0K739_ORYPU; Uncharacterized protein
STRINGOPUNC02G35060.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-37C2H2 family protein