PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC02G35370.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 230aa MW: 23685.7 Da PI: 10.5311

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC02G35370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.7	5.1e-39	29	131	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg..... 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +s++ +s+ OPUNC02G35370.1 29 AVRKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSNS---NSNdlllp 119 789*************************************************************9999988843222222222...22235666 PP TCP 89 ...........k 89 + OPUNC02G35370.1 120 raapfilgkrlR 131 555555543331 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	35	89	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	6.5E-33	35	113	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MTTRPDGGGA APDKQLVPAS NGNGTTALAV RKPPSKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TSSPSSLRSN SNSNDLLLPR 120 AAPFILGKRL RAADDQTADP APAPDAAVPT QGFWALPARA DFGQLWSFAA APEMMVAAAA 180 PAMTGEASAA RVGNYLPMAQ GNLNLLASFS GGPGGAGAAA TGRAEEESAR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	0.0	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	0.0	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	0.0	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627477.1	1e-98	transcription factor TCP7
Swissprot	Q9FMX2	2e-76	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0E0K785	1e-162	A0A0E0K785_ORYPU; Uncharacterized protein
STRING	OPUNC02G35370.1	1e-163	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1941	33	100

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-43	TCP family protein