PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC02G35560.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 647aa    MW: 71109.7 Da    PI: 5.3069
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC02G35560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.91.3e-06114135426
                      ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                      ++C +f++ G C  GdrC F H 
  OPUNC02G35560.1 114 VPCYYFQK-GMCVKGDRCAFLHL 135
                      69******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.6381746IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-41745IPR000571Zinc finger, CCCH-type
PfamPF156632.7E-111872No hitNo description
PROSITE profilePS5010311.0284874IPR000571Zinc finger, CCCH-type
SMARTSM003562.55073IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.554110137IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5111136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-5113134IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4115134IPR000571Zinc finger, CCCH-type
PfamPF146081.6115134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDSAVRPPPV DEEEARRRRS TDCIYFLASP LTCKKGSECE YRHSDAARMN PRDCWYWFNG  60
NCANPKCSFR HPPLDGLGGA PTTPRTSQQS TPQVSVAAQA PVSNTASGTA KQGVPCYYFQ  120
KGMCVKGDRC AFLHLPQATG SPAPQHATKV FAPASVPHPQ LKNSWTKPNS SAQQNASTAI  180
FDKPKDSAHN GKTAQKQNLT NRAGHSSGII HDKSSYMPSG VTKNYRPPLS TGDDLAENGM  240
EMGEFVREPS AGSDVLTGGA DDSAEQSLRE DRGTYRRSNG EQHIGMLRQT HGSYGFERSH  300
RSSADKLLSE SRFSQREPMP LTADSSDLRQ RLLKQRRLNN PRSGQVSDRH NVYLEDERHD  360
HHRRRGEEQA THDGVSSSRL RGRIKLPAET SSDRLGLQPE KERERGPRAR LSPPSQTDLR  420
GKLHDRLKAK PNEDVSGNVK SSLAKANEDA DSLNFAGPKS LAELKAKKVA GSSMKSSRSL  480
AGPVRMTSEI VTIKDSSDPV LFDGPKPLNA ILKRKRERDS GNATDSGSKQ EEHSAGDEEG  540
SQNDFQNIED DIVGTNTVGN GEAFQPGDDV VYGDSLSPAD DIAAEAADDA SKELEEQQDV  600
ETAEEYDYEM DDVNAAEEEN EYQEYEDEDD DLEDDDDFAR KVGVMIT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0040820.0AP004082.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1149_C12.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626088.10.0zinc finger CCCH domain-containing protein 19 isoform X1
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A0E0K7B30.0A0A0E0K7B3_ORYPU; Uncharacterized protein
STRINGOPUNC02G35560.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]