 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC03G00300.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
GRAS |
| Protein Properties |
Length: 374aa MW: 40019.2 Da PI: 7.463 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC03G00300.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 273.8 | 5.2e-84 | 16 | 373 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
ve+L+++A+ ++gd +a+++Larl +++ p++ p+ R a+yf+ AL++ l++ + pp ++++ ++ +l+a+k+fs++sP+l f+
OPUNC03G00300.1 16 VEQLVQAAKLTEAGDVLAARHILARLINHRLPAAaPPLLRSAFYFKDALRRALSS-----PSPPPPAASTPLDVLLKLTAYKAFSDLSPLLHFA 104
689**********************999987777589*****************9.....6667888888889********************* PP
GRAS 95 hltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
h+t+ qa+l++++ + +++H++Dfdi+ G QW++L++ La R +g l++T+++ +s++ el+ +++ L+ fA+ l vpf+f ++ +l+
OPUNC03G00300.1 105 HFTCVQAVLDELSAAcSCIHVLDFDIGVGEQWASLMHDLAHRHAG-VALKVTALVTTSSHHPLELQLIHDTLSTFAADLAVPFRFAAF---NLD 194
***********99888**************************988.79***************************************8...555 PP
GRAS 188 dleleeL.rvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
+ +l +L +v +a+aV+l + + + ++vL+lv++l +k+vv v++ +d+++ +F++++l+al+ ++l++sl+a +++s
OPUNC03G00300.1 195 ATDLTTLlAVAAgTDAIAVHLPVGSVHAT----A----VPSVLHLVRRLGAKLVVSVDRGCDRGELPFAAHLLQALRSTVSLLESLDAM-GTDS 279
55555442677789********9888887....4....456*********************************************998.99** PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+ ++k+Er++++++i+++v ++ a +++t + Wr+ l +aGF pv++s+ a++qa++ll+k +++g+r+e + gsl+l W++ +L svSaW
OPUNC03G00300.1 280 DVAAKIERFWVQPKIEECVRAAAAP-GGDKTTTAAWRATLASAGFVPVQVSSLAEAQAESLLKKLPVRGFRLERRGGSLFLHWQRGELASVSAW 372
*********************9998.889999************************************************************** PP
GRAS 374 r 374
r
OPUNC03G00300.1 373 R 373
8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 374 aa
Download sequence Send
to blast |
MPPFPNPKLT ADDNTVEQLV QAAKLTEAGD VLAARHILAR LINHRLPAAA PPLLRSAFYF 60
KDALRRALSS PSPPPPAAST PLDVLLKLTA YKAFSDLSPL LHFAHFTCVQ AVLDELSAAC 120
SCIHVLDFDI GVGEQWASLM HDLAHRHAGV ALKVTALVTT SSHHPLELQL IHDTLSTFAA 180
DLAVPFRFAA FNLDATDLTT LLAVAAGTDA IAVHLPVGSV HATAVPSVLH LVRRLGAKLV 240
VSVDRGCDRG ELPFAAHLLQ ALRSTVSLLE SLDAMGTDSD VAAKIERFWV QPKIEECVRA 300
AAAPGGDKTT TAAWRATLAS AGFVPVQVSS LAEAQAESLL KKLPVRGFRL ERRGGSLFLH 360
WQRGELASVS AWRC
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC213149 | 0.0 | AC213149.2 Oryza punctata clone OP__Ba0040A05, complete sequence. |
