PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G00880.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 1792aa    MW: 197890 Da    PI: 5.7115
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G00880.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.7e-0617721792526
                       --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH    5 lCrffartGtCkyGdrCkFaHg 26  
                       +C+ f+++G+C+ G++C++ H+
  OPUNC03G00880.2 1772 ICK-FHENGYCRKGASCNYLHP 1792
                       799.9999*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-886159IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.9E-9108167IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd155681.12E-19114159No hitNo description
SMARTSM002491.6E-6114160IPR001965Zinc finger, PHD-type
PROSITE patternPS013590115175IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001517.9E-5341427IPR019835SWIB domain
SuperFamilySSF475921.13E-21346423IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.4E-26346429IPR003121SWIB/MDM2 domain
PfamPF022011.1E-16349422IPR003121SWIB/MDM2 domain
SuperFamilySSF1590422.35E-34483608IPR004343Plus-3 domain
SMARTSM007191.8E-46483592IPR004343Plus-3 domain
PROSITE profilePS5136032.714483615IPR004343Plus-3 domain
PfamPF031266.1E-26488591IPR004343Plus-3 domain
SuperFamilySSF552773.01E-15766826IPR003169GYF domain
PROSITE profilePS5082914.508773825IPR003169GYF domain
SMARTSM004441.2E-13774827IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.2E-14775826IPR003169GYF domain
PfamPF022132.3E-9776815IPR003169GYF domain
PROSITE profilePS5010314.12617671792IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.01E-517691791IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034968Biological Processhistone lysine methylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1792 aa     Download sequence    Send to blast
MEGAAAAAPA AGELLSPAEA DWPPELRLPP PPPAAASEGE PPPARAAMGM DDSQFLGSII  60
GLPAQPPQAT VEALTVVGVK RRRGRPPKKR DGAATAVIPA AKPARRREDE EEVVCFICFD  120
GGNLVVCDRR GCPKVYHPAC IKRDEAFFQS RSKWNCGWHI CSSCEKAVHY MCYTCTYSLC  180
KVCIKQGKFF SVRGTKGFCD TCYSTILLIE SKDEGDTKIV VDFDDQNSWE YLFKLYWLDL  240
KGKLSLTLEE LTSAKSRWNA PTTYTRKEKD ESSDDLYDAN NDDDAGSDCS SGKRKRNSST  300
KKGRKRWKPN SDCSIATKKV ETVTRDAGTL SNKVPTEEAS LPLDAKWASP ELLEFVGHMR  360
DGDQSFISQF DVQALLLDYI KQNNLRDPQR KSQIICDSRL HRLFRKTRVA HFEMLKLLEM  420
HFLVSEPSAV NDGSQGIINP NSAQIDHVSG YSDMAAKFSP DKRRRMHRKM EREPQANPED  480
YAAIDMHNIN LIYLRRSLME DLIDDPTFSE KISGAFVRIR ISGLGQKQDM YRLVKVVGTH  540
KVSEKYSVGK KMTHFALEIM NLNKKEIITM DTVSNQDFTE EECKRLRQSM KYDLISRLKV  600
GDIQEKAKIF QFIRVNDWLE NEKLKLCHLR DRAKCVEKLQ LLNTPEERAR RINEVLDVHV  660
DSHMDPDYES DEEFGNKKAV ERNVNWARSD PFVSPIKVKY SNTSQKNGDA TRHHKNLSKQ  720
NTECKSEAAR NFENSHSSVG MDIPKSGTNV KSTMCETTSL SSSGVVSSDM EPEKVWHYKD  780
PSGNIQGPFT LVQLSKWTSY FPRDMRVWLT FESEERSLLL TEVLSKQPKD FGQPASVTTS  840
SKSTLADTGQ NRNTQIVDLN RAPSPVGYSM LNSFETTVQS TKHSAPERES VNSLDDRLSH  900
STDSVPPKDT NASNSQAMCQ IKHSGSLPSP GSPHQRSDLH HDEVQGGRSG EWNNQLNSEL  960
WSPSMPQTSS SAHSNVESHH DHYPSWSQVQ HDPKNSLQAG SGKDLNSRQD FLQKLPSQRT  1020
TRDVPSPVFA WSPSESRTAS SQHEGSCLSS TTNLCTHDEL HSSIASAKAK SFAPATPVED  1080
RGSSSPSGML SHSERAPICS PQSAPSASDT CKMEEIMNQQ KTLEADISNT SVNQSPQKIL  1140
PESSPDNQDA EHEYRSPPPI SESKALSPQS RTTPESSPDN QDTEREYPSP PPISGSKEIS  1200
PQSRTVPESS PDNQDIGHEY PSPPPIPESI ELSPHSKVLP ESSPDNQDIE PECPSPPQIP  1260
ESKELSRQSK ILLESSPDNQ DIKPVHPSPP QIPGSEELSR QSKILPESSP DNQDIKCEYS  1320
SPTPIPKSKE LSLQSKILPE SSSDNQDIKR EDPSPIPVSK SKELSPQSKI LSESYRDNQD  1380
VEREYPSSVL ISESKELAVD LPGSISLAPE KIVSTDVGEN SSLAFIFPKS PPAGDGALKS  1440
VSDIAKAHLE GEDSNVKEEL YVESTVVIRD DMVVNPVSGV ESIDMSENLL ESLMEQSCGT  1500
FYMDGTTTLE GFLSGSTKEE PQCSSPIALS TCSSPIALSP WGEHGYYQGD SVGSSLWGVQ  1560
DDEPISNIWP LSTQTPALQY SSGSTAHFID EVTVTHGNNG VVLSTTPGEE VGLPNSGVCV  1620
DWGLVEQVNP EANDASISMI DKNTGLEYSQ PSANDGSDVG TARKTNHNTN LSLNHETAVP  1680
LSRSSGEASK KHGFITDLNV ATSGKALGDT KNWNPSAGNA NRGSQRNHHR DRYSQISESW  1740
LLSSNYSRSR SDGYGTGGSS RSTPRGQTQR GICKFHENGY CRKGASCNYL HP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2171980.0AC217198.1 Oryza punctata clone OP__Ba0023G04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630500.10.0zinc finger CCCH domain-containing protein 20 isoform X2
TrEMBLA0A0E0K7S70.0A0A0E0K7S7_ORYPU; Uncharacterized protein
STRINGOPUNC03G00880.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.11e-177DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding