PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G02270.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 995aa MW: 110082 Da PI: 5.3124

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G02270.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.4	3e-28	625	675	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+dl+k+F++++k+AAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++ OPUNC03G02270.1 625 EKTVSLQDLRKHFAGSLKEAAKNLGVCPTTLKRICRQHGINRWPSRKIKKV 675 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.029	614	695	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-26	627	675	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.0E-25	847	931	No hit	No description
SuperFamily	SSF54277	1.69E-22	847	931	No hit	No description
SMART	SM00666	5.8E-25	849	932	IPR000270	PB1 domain
PROSITE profile	PS51745	22.272	849	932	IPR000270	PB1 domain
Pfam	PF00564	6.8E-17	850	931	IPR000270	PB1 domain
CDD	cd06407	1.15E-42	850	931	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MEQKPPPLSP PRRDEEEDGS LGCGMSGTGD IAAGDLDLME EFLLATPGLD LTEFWHPGAS 60 PGAASPFSPL FDIGSSVTTL TPPAPAAGED DKDEAEMPSR GGGGGGGLEV SPAYRGWTLQ 120 TAPQVAAVEP TVKERLRRAL ERIASQSQAQ RGDGELLVQV WVPTRIGDRQ VLTTCGQPFW 180 LDRRNQRLAS YRTVSMKYQF SADESARADL GLPGRVFVGR VPEWTPDVRY FSTEEYPRVQ 240 HAHYFDIRGS VALPVFEPRS RACLGVVELV MTTQKINYSA EIENICNALK EVDLRSSDVS 300 SDPRSKVVDA SYRAIIPEIM DVLRAVCDTH NLPLAQTWIP CICQAKGGSR HSDESDKHCV 360 STVDEACYVR DHSVLGFHQA CSEHHLFRGE GVVGRAFGTN EPCFSPDITT YSKTQYPLSH 420 HAKLFGLRAA VAIRLRSVKT GSLDFVLEFF LPMKCINTEE QRAMLNSLSN TIQEVCYTLR 480 VVKPKELLND GPFEISQPTR PEFYAKSVHE NLDELCSGIN VPGRTISLEA SEEVSSWIAS 540 LVDAQNKGGK GEIDVDLPFG FSKQDDEGFS VTAGWHTSPA IAPDGSMFSG FKQHEDYDVK 600 ENTCSSDPSN SNSDKAVEKR RTKTEKTVSL QDLRKHFAGS LKEAAKNLGV CPTTLKRICR 660 QHGINRWPSR KIKKVGHSLK KLQMVIDSVH GPEGTVQLSS LYENFTKTTW SERELQGDVD 720 FPASEQNFQL EPSVPDRPCE GRFTSHTSGS NSISPSCSQS SNSSLGCSSG PKPQQQHGSA 780 PQLAVKEEIS MDENHCSTLI KSASHAEVEL QMFVEERPTM LFRSHSQVLL SEHKLIENMS 840 NVQKARSDSL KIKAIYGEER CIFRLQPSWG FQRLKEEIVK RFGIAQDTHM DLKYLDDESE 900 WVLLTCDADL LECIDVYKSS SNQTVRILVN PSTQPLLNAS FGQTGKECLM LPSVVSQDWH 960 TQASDLDTWA EVQTNGQLPA DVAVEPCCVL ELEMR

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MEQKPPPLSP PRRDEEEDGS LGCGMSGTGD IAAGDLDLME EFLLATPGLD LTEFWHPGAS  60
PGAASPFSPL FDIGSSVTTL TPPAPAAGED DKDEAEMPSR GGGGGGGLEV SPAYRGWTLQ  120
TAPQVAAVEP TVKERLRRAL ERIASQSQAQ RGDGELLVQV WVPTRIGDRQ VLTTCGQPFW  180
LDRRNQRLAS YRTVSMKYQF SADESARADL GLPGRVFVGR VPEWTPDVRY FSTEEYPRVQ  240
HAHYFDIRGS VALPVFEPRS RACLGVVELV MTTQKINYSA EIENICNALK EVDLRSSDVS  300
SDPRSKVVDA SYRAIIPEIM DVLRAVCDTH NLPLAQTWIP CICQAKGGSR HSDESDKHCV  360
STVDEACYVR DHSVLGFHQA CSEHHLFRGE GVVGRAFGTN EPCFSPDITT YSKTQYPLSH  420
HAKLFGLRAA VAIRLRSVKT GSLDFVLEFF LPMKCINTEE QRAMLNSLSN TIQEVCYTLR  480
VVKPKELLND GPFEISQPTR PEFYAKSVHE NLDELCSGIN VPGRTISLEA SEEVSSWIAS  540
LVDAQNKGGK GEIDVDLPFG FSKQDDEGFS VTAGWHTSPA IAPDGSMFSG FKQHEDYDVK  600
ENTCSSDPSN SNSDKAVEKR RTKTEKTVSL QDLRKHFAGS LKEAAKNLGV CPTTLKRICR  660
QHGINRWPSR KIKKVGHSLK KLQMVIDSVH GPEGTVQLSS LYENFTKTTW SERELQGDVD  720
FPASEQNFQL EPSVPDRPCE GRFTSHTSGS NSISPSCSQS SNSSLGCSSG PKPQQQHGSA  780
PQLAVKEEIS MDENHCSTLI KSASHAEVEL QMFVEERPTM LFRSHSQVLL SEHKLIENMS  840
NVQKARSDSL KIKAIYGEER CIFRLQPSWG FQRLKEEIVK RFGIAQDTHM DLKYLDDESE  900
WVLLTCDADL LECIDVYKSS SNQTVRILVN PSTQPLLNAS FGQTGKECLM LPSVVSQDWH  960
TQASDLDTWA EVQTNGQLPA DVAVEPCCVL ELEMR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100046	0.0	AK100046.1 Oryza sativa Japonica Group cDNA clone:J013153P10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629744.1	0.0	protein NLP1
Refseq	XP_015629745.1	0.0	protein NLP1
Swissprot	Q10S83	0.0	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A0E0K8C4	0.0	A0A0E0K8C4_ORYPU; Uncharacterized protein
STRING	OPUNC03G02270.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]