PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G03490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 644aa    MW: 68919 Da    PI: 5.4715
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G03490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.7e-05533558123
                      EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                      ++C+  +C ++F+++ +L +H ++ +
  OPUNC03G03490.1 533 FQCEidYCRMTFKNRAELSVHKKNtC 558
                      89*******************99866 PP
2zf-C2H212.40.00048558580323
                      ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                      C+   Cg++F+++ +L+rH++ H
  OPUNC03G03490.1 558 CTvkSCGRHFRSHKYLRRHQSIH 580
                      88889***************999 PP
3zf-C2H210.70.0016616640123
                      EEET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                      ykC+   C+k ++  s+++rH r++
  OPUNC03G03490.1 616 YKCTtpGCNKIYKFVSDFTRHKRRC 640
                      99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035516533555IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.009556585IPR007087Zinc finger, C2H2
SMARTSM003550.42556580IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-4557580IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280558580IPR007087Zinc finger, C2H2
SuperFamilySSF576673.1E-9572614No hitNo description
Gene3DG3DSA:3.30.160.601.8E-9581607IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.887586615IPR007087Zinc finger, C2H2
SMARTSM003550.04586610IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280588610IPR007087Zinc finger, C2H2
SuperFamilySSF576673.56E-7605639No hitNo description
Gene3DG3DSA:3.30.160.601.2E-7608638IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035530616638IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MRIRRYAARL LASSAPSSLP PQPAAAAWCH AAADDCAICD LTRSASSQVV APDAIKQKGH  60
IAGRPPESEL RSDARIGLAE RPEDQGRDID DGPPVKRPLT FTDAASRLEG SGEIITGVTT  120
DPAARVGTHI ANGAISGQGD RVATCLADES APELIATGVA SLVIGATAEP EVLKGASFAN  180
ATVTEPRVLE RVPLACEAAT EQEAEVSVPG VTEGALPDGE GAAKLEITRG HSQESAAKME  240
VTKGISLVNE ASADSELAHR VPTEPGVELS VPEVSERVPV VTEDFTELGD TFSDLHIKGF  300
ASIDNEGSVE QEVTGSGSLV NEATEMEVKE GTCIFTRAAA ELGDTGRVSA CSGDGDIALD  360
EPRPPDCVSE VANVNVGNAG EAVASKVHSC RDDAESVGGS INSTGNGHVS SNSPTADEAA  420
PPGGCTDTPS VSCLSDIVAR SIGKSGRTDI ICYVRRRGKR KLEMVEVKEE NVEMDDSAIC  480
DQYDDKVALE RTGPCESVTS TAVSVEIKIA DIKRELEDNS TASKGKKKRG KRFQCEIDYC  540
RMTFKNRAEL SVHKKNTCTV KSCGRHFRSH KYLRRHQSIH NDDMPYKCPW EGCSMAFKWS  600
WDRGEHFQVH AGKRPYKCTT PGCNKIYKFV SDFTRHKRRC KPQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A9e-4353363923129Lysine-specific demethylase REF6
6a58_A9e-4353363923129Lysine-specific demethylase REF6
6a59_A9e-4353363923129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454460RRRGKRK
2454461RRRGKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0688030.0AK068803.1 Oryza sativa Japonica Group cDNA clone:J013161F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632116.10.0uncharacterized protein LOC4331626
TrEMBLA0A0E0K8T50.0A0A0E0K8T5_ORYPU; Uncharacterized protein
STRINGOPUNC03G03490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.19e-41relative of early flowering 6