PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G03500.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 208aa    MW: 22445 Da    PI: 10.1324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G03500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000234769123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C  C++ F++   L  H++ H
  OPUNC03G03500.1 47 YECVFCKRGFTTAQALGGHMNIH 69
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.5E-64574No hitNo description
PROSITE profilePS5015710.5124774IPR007087Zinc finger, C2H2
PROSITE patternPS0002804969IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MERGGDKEFM VEMALMSSPG QQEAMTLQAA AVTTSPTAAP AAARPYYECV FCKRGFTTAQ  60
ALGGHMNIHR RHRHRAKPPG RRDTRPTATG ITSTVSRDIG CYNQHRYLPY PPPPTSPPTS  120
SSFATSYAGG MAGVDGESKR AAGGSTGHVR ELSLFGGADS STDRDHDLHL RLGRHGRGGD  180
GSPRTPEGSP ERKPDLDLEL RLGRRPRH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2297551e-121AC229755.1 Oryza minuta clone OM__Ba0175J13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629450.18e-92transcriptional regulator SUPERMAN
TrEMBLA0A0E0K8T61e-148A0A0E0K8T6_ORYPU; Uncharacterized protein
STRINGOPUNC03G03500.11e-149(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.16e-15C2H2 family protein