PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G03730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family E2F/DP
Protein Properties Length: 469aa    MW: 50631.1 Da    PI: 9.7634
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G03730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP84.86.6e-27218304371
          E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                      +++Lr++++k   ++ek+e+ g++t+neva+eLv+e                     d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  OPUNC03G03730.1 218 GRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpnnsilppdpdnpnaqqyDEKNIRRRVYDALNVLMAMEIISK-DKKEIQWKG 304
                      689*******...*****999************************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-44212309IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.0E-37216304IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.31E-19219305IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.0E-24219304IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144582.19E-37309406IPR014889Transcription factor DP, C-terminal
SMARTSM011381.3E-72311467IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.83E-36311426No hitNo description
PfamPF087811.2E-34312440IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MRPPGTALGF GLISGAGSRR VTEPKPPNFI SKKIIKRKKQ TERGEKKLAF ASLPALSTIS  60
LVSFSPSNLP PLCRFRVSAL QLLPNSGPRF ARSRPPMVSG VAHRPDDDSG RAASTFQRPP  120
QPAGGRPSLA TPPPSGGAHS ASTSGGSAGS PSSRSEQHVP AAAGMAAGAA AASTPVSENT  180
FLRLNDLDIH GDDAPSSQAP TSKKKKRGAR AVGPDKGGRG LRQFSMKVCE KVESKGRTTY  240
NEVADELVAE FADPNNSILP PDPDNPNAQQ YDEKNIRRRV YDALNVLMAM EIISKDKKEI  300
QWKGLPRTSI NDIEDLQTEL VGLKSRIEKK NAYLQELQDQ LIQRNEQLYG SGNTPSGGVA  360
LPFILVQTRP HATVEVEISE DMQLVHFDFN STPFELHDDS FVLKAMSSCG EEQIDDIHDL  420
IPNGGESSSM PNIYRQQVQQ PARATNGTAR LPSSPPIPGI LKGRVKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-34210309193PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2245890.0AY224589.1 Oryza sativa (japonica cultivar-group) isolate 31182 E2F dimerization factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628001.10.0transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-129DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A0E0K8W40.0A0A0E0K8W4_ORYPU; Uncharacterized protein
STRINGOPUNC03G03730.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-126Transcription factor DP