PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 229aa    MW: 25508.3 Da    PI: 9.8754
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.6e-141422191399
                      TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      s+ + lp++f+e++  k   +  +tl de+ ++++ ++    ++++  l++GW +F+ ++gL +gD  vF+l++ ++f  +v+++r+
  OPUNC03G06010.1 142 SH-VGLPRHFCETYLPK--HDAIVTLLDEKDEEFSTNY--LAYKNG--LSGGWAGFALDHGLLDGDATVFQLVKPTTF--KVHIIRA 219
                      33.78*********422..4568***************..566555..9**********************9986666..9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-18127220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-22128219IPR015300DNA-binding pseudobarrel domain
CDDcd100177.18E-22133218No hitNo description
SMARTSM010194.9E-15135220IPR003340B3 DNA binding domain
PfamPF023623.6E-12142219IPR003340B3 DNA binding domain
PROSITE profilePS5086310.461146220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGMEKGMTAY EAARERTVEE NKRKMEALNL RHLSAAITVA PKTPSPMKQK RRRIIEAAVV  60
APSPPRRSRR LANLPEVKYA EVAPDGAERM KRSPRKAIDS IYLATRGSIS MEARLEAARK  120
AEELESQLDP GFPSFVKPML HSHVGLPRHF CETYLPKHDA IVTLLDEKDE EFSTNYLAYK  180
NGLSGGWAGF ALDHGLLDGD ATVFQLVKPT TFKVHIIRAT IDDGNVATK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14953KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220170.0AK122017.1 Oryza sativa Japonica Group cDNA clone:J033111M07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633231.11e-161B3 domain-containing protein Os03g0184500
SwissprotQ10QS91e-162Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBLA0A0E0K9S41e-168A0A0E0K9S4_ORYPU; Uncharacterized protein
STRINGOPUNC03G06010.11e-169(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]