PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G06240.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 325aa    MW: 35065.5 Da    PI: 6.5202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G06240.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.4e-15106157155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  OPUNC03G06240.1 106 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVKELE 157
                      79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.92E-15104161No hitNo description
PROSITE profilePS5088816.177105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-12106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17106170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-14106171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-11111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MALEAVVFPQ GHFGYGCGRD SPAYGMPWCD VLAAAGGGFG EFYGVDEWDD QLQVASVDEW  60
DVASKDNSDA STEGKAAAER AAPVAAGRRK RRRTKVVKNK EEIECQRMTH IAVERNRRRQ  120
MNEYLAVLRS LMPPSYAQRG DQASIVGGAI NYVKELEQLL QSLEVQKSLK NRTGATDARD  180
SPFAGFFSFP QYSTSSRSGC SAAASSGSSG NASSVVMDDT AGSAESGRQP AAIADIEVTM  240
VEGHASLKVL ARRRPKQLLK LVVGLQQLRI PPLHLNVTTV DAMVLYSFSL KVEDDSKLGS  300
VEDIATAVHQ ILGSIQHQEA VLSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18892RKRRR
28893RKRRRT
3106117RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1075550.0AK107555.1 Oryza sativa Japonica Group cDNA clone:002-130-B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629273.10.0transcription factor bHLH96
SwissprotQ9C7T49e-81BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A0E0K9V30.0A0A0E0K9V3_ORYPU; Uncharacterized protein
STRINGOPUNC03G06240.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]