PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G06880.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 543aa MW: 56747.2 Da PI: 8.5518

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G06880.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	58	80	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OPUNC03G06880.1 58 FVCEICNKGFQRDQNLQLHRRGH 80 89*******************88 PP
2	zf-C2H2	11.1	0.0013	134	156	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + OPUNC03G06880.1 134 WKCDKCSKKYAVQSDWKAHSKIC 156 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.55E-7	57	80	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	57	80	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	58	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	58	80	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	60	80	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	99	129	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.8E-4	122	155	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.55E-7	129	154	No hit	No description
SMART	SM00355	150	134	154	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MEVETSSGTA ERGAGAQQQP PPPPQPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFVC 60 EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG 120 IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YRCDCGTLFS RRDSFITHRA 180 FCDALAEESA KARAAPPPPP PAADEDGTSA SAGAPPPQAP LPPPAPAPAP PPPPAAAPAP 240 AAQPEQRDRD TAPDQFATPA APPPPVPPPP SVAPPNECVS SSSSGVAPTS QSLLSSMFAP 300 PSVAQAPQYA DPIGVGAGGH QERALPAKPP ALCLAPNASS SLFTAPVPAD RQQFAPPPPP 360 SPSPHMSATA LLQKAAQMGA TSSSSSFLRC LGLDMSSSSP APPSSSGQHH HHHHHQETMQ 420 VPLPASSLPE WPPRLQPEPS PMLSSGLGLG LPYDATGGPV SLPELMMGQS TLFSAKPATL 480 DFLGLGVSPT GASTSRGFPT FIQPIGGAVS LAGSATVAAE TFGAAHGSQA NPWERNPSSS 540 PIL

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MEVETSSGTA ERGAGAQQQP PPPPQPPAKK KRALPGMPDP DAEVIALSPK TLLATNRFVC  60
EICNKGFQRD QNLQLHRRGH NLPWKLRQRS GKEVRKRVYV CPEPTCVHHD PSRALGDLTG  120
IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKICGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAEESA KARAAPPPPP PAADEDGTSA SAGAPPPQAP LPPPAPAPAP PPPPAAAPAP  240
AAQPEQRDRD TAPDQFATPA APPPPVPPPP SVAPPNECVS SSSSGVAPTS QSLLSSMFAP  300
PSVAQAPQYA DPIGVGAGGH QERALPAKPP ALCLAPNASS SLFTAPVPAD RQQFAPPPPP  360
SPSPHMSATA LLQKAAQMGA TSSSSSFLRC LGLDMSSSSP APPSSSGQHH HHHHHQETMQ  420
VPLPASSLPE WPPRLQPEPS PMLSSGLGLG LPYDATGGPV SLPELMMGQS TLFSAKPATL  480
DFLGLGVSPT GASTSRGFPT FIQPIGGAVS LAGSATVAAE TFGAAHGSQA NPWERNPSSS  540
PIL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-35	130	191	3	64	Zinc finger protein JACKDAW
5b3h_F	1e-35	130	191	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC229795	0.0	AC229795.2 Oryza minuta clone OM__Ba0029C15, complete sequence.
GenBank	AC233548	0.0	AC233548.1 Oryza minuta clone OM__Ba0209P16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632656.1	0.0	protein indeterminate-domain 1
Swissprot	Q9LVQ7	1e-138	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0E0KA32	0.0	A0A0E0KA32_ORYPU; Uncharacterized protein
STRING	OPUNC03G06880.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-103	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]