PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G07300.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 352aa    MW: 38023 Da    PI: 5.4172
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G07300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-102763161055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  OPUNC03G07300.1 276 RKRRERINERLKILQNLIPNG-----TKVDISTMLEEAVHYVKFLQ 316
                      9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.856266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-13269328IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-12271325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-11272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.79E-12275320No hitNo description
PfamPF000105.1E-8276316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MESSEASWHS FDPSVAMEDS EAMAQLLGVQ YFGNEQEQQQ QQPAAPAQQQ QQPAPPPPPA  60
MYWPGHEAAD QYYSSAPYCY MQQQQQQQHY GCYDGGAMVA AGDFFVPEEQ LVADPSFMVD  120
LNLEFEDQHG GEAGIAGSSA AAAAAGKMTP ACKRKVEDHK DESCTDNVAR KKARSTAASV  180
VQKKGNKNAQ SKKAQKGACS RSSNQQESNG GGDGGNVQSS STNYLSDDDS LEMTSCSNVN  240
SASKKSSLSS PATGHGGAKA RAGRGAATDP QSLYARKRRE RINERLKILQ NLIPNGTKVD  300
ISTMLEEAVH YVKFLQLQIK LLSSDDMWMF APIAYNGVNV GLELKISPPQ QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235681e-154AC123568.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1345H02, from chromosome 3, complete sequence.
GenBankAC1322141e-154AC132214.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence.
GenBankAP0149591e-154AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629469.10.0transcription factor bHLH85
TrEMBLA0A0E0KA900.0A0A0E0KA90_ORYPU; Uncharacterized protein
STRINGOPUNC03G07300.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116802832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.18e-45bHLH family protein