PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G08950.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 327aa    MW: 35584.9 Da    PI: 5.4384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G08950.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11143190355
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  OPUNC03G08950.1 143 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 190
                      5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-14144206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-16144204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.99E-10145194No hitNo description
SMARTSM003533.2E-11146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDEQNQWLAE PEPEELTYMY HQEEHARMQE QFAGTPLVEQ PVRFDQFYPT SMAPNQFHPS  60
HCSSFPTFGG SSALPSLAFG AVATTKKEQV HQPSPSSSNV LSFGGQAQST TLDFSGRGWQ  120
QDDGVGVSQQ PPERRSRPPA NAQEHVIAER KRREKLQQQF VALATIVPGL KKTDKISLLG  180
STIDYVKQLE EKVKALEEGS QRTAEPTTAF ESKCRISAAD DDGGSASSGA DDGSSSSTSP  240
TVEASIHGST VLLKICCKER RGLLVMVLSE LEKQGLSIIN TSVVPFTDSC LNITITAKAR  300
LALPIEEGFS TAIELVKNLT VVVRGFK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148153ERKRRE
2149154RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2264070.0AC226407.1 Oryza minuta clone OM__Ba0018H10, complete sequence.
GenBankAC2264080.0AC226408.1 Oryza minuta clone OM__Ba0085I08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880159.10.0transcription factor bHLH18
TrEMBLA0A0E0KAV60.0A0A0E0KAV6_ORYPU; Uncharacterized protein
STRINGOPUNC03G08950.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-29bHLH family protein