PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G09060.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 924aa MW: 101194 Da PI: 7.1068

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G09060.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	2.9e-11	751	799	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P + +k Ka++L + ++Y++sLq OPUNC03G09060.1 751 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 799 58************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50053	8.96	1	88	IPR000626	Ubiquitin domain
Gene3D	G3DSA:3.10.20.90	1.1E-6	20	99	No hit	No description
SuperFamily	SSF81383	5.89E-12	331	397	IPR001810	F-box domain
PROSITE profile	PS50181	10.955	331	377	IPR001810	F-box domain
Gene3D	G3DSA:1.20.1280.50	1.7E-10	334	411	No hit	No description
Pfam	PF00646	2.3E-4	336	378	IPR001810	F-box domain
SMART	SM00256	7.9E-4	337	377	IPR001810	F-box domain
SuperFamily	SSF47459	5.23E-17	746	814	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.57E-11	746	803	No hit	No description
PROSITE profile	PS50888	15.796	748	798	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-17	748	815	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.4E-9	751	799	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-10	754	804	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 924 aa Download sequence Send to blast
MKLRLRSMDQ RSGGGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS 60 EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQPRNPNPVV SSITGAVGPT 120 KSHAESGSSS SMPQASCVKP GLPVASDPHP PDVVMEEAFA AIKSKSSFVV GVMKREMENA 180 GGADGTIIYR LVVALHAALL DADFLSANPV GYRLQLPQDW SSGSFIPISM RYTLPELVEA 240 LPAVEEGMVA VLNYSLMGNF MMVYGHVPGA TSEVRRLCLE LPKLAPLLYL DSDEVSAAEE 300 REIHELWRVL KDEMCLPLMI SLCQLNNLSL PPCLMALPGD VKVKVLEFVR GVDLARVQCT 360 CKELRDLAAD DNLWKKKCEF NTQGEGSRVG RSWKERFGAA WKVSNNKRQK RVSPMFLNYG 420 WGNPYSPHGF PVIGGDSDML PFIGHPNLLG RSFGNQRRNI SPSCSFGGHR HNFFAYGLKT 480 KKEKEHDSDM RCTMCKCIYS DQRKVIGLAG KYIHDNYVQK AVAQPVHHYL VEFAVIAGWY 540 CTSYRLPQRS KYKNPIRCQH TSACRWQDAP AEGIHFDCII PLPINPYQLP PSGGACCSTT 600 QASASAKDGG NGLQIPKPLE MYSPPCSAAA SSQGHCFAVG ANQLASLDLA MDFDEPILFP 660 VHNASLQEGI QFYNPTGDTQ LSRNMSIDKC LKGSERKGSG EGSSLLHSQE ETGEMPQREL 720 SMEHAGEKAG DADASREEYV HVRAKRGQAT NSHSLAERFR REKINERMKL LQDLVPGCNK 780 ITGKAMMLDE IINYVQSLQR QVEFLSMKLS TISPELNSDL DLQDILCSQD ARSTFLGCSP 840 RLSNAHPNLY RAAQQRLSPP GFYGSLCVPN PADVHMTRTV HLASFPQQRG LIWDEELRNI 900 APAGFASDAA GTSSLENSDS MKVE

Sequence ? help Back to Top

Protein Sequence Length: 924 aa Download sequence Send to blast

MKLRLRSMDQ RSGGGGAAET HRVQLPDTAT LSDVKAFLAT KLSAAQPVPA ESVRLTLNRS  60
EELLTPDPSA TLPALGLASG DLLYFTLSPL PSPSPPPQPQ PQPRNPNPVV SSITGAVGPT  120
KSHAESGSSS SMPQASCVKP GLPVASDPHP PDVVMEEAFA AIKSKSSFVV GVMKREMENA  180
GGADGTIIYR LVVALHAALL DADFLSANPV GYRLQLPQDW SSGSFIPISM RYTLPELVEA  240
LPAVEEGMVA VLNYSLMGNF MMVYGHVPGA TSEVRRLCLE LPKLAPLLYL DSDEVSAAEE  300
REIHELWRVL KDEMCLPLMI SLCQLNNLSL PPCLMALPGD VKVKVLEFVR GVDLARVQCT  360
CKELRDLAAD DNLWKKKCEF NTQGEGSRVG RSWKERFGAA WKVSNNKRQK RVSPMFLNYG  420
WGNPYSPHGF PVIGGDSDML PFIGHPNLLG RSFGNQRRNI SPSCSFGGHR HNFFAYGLKT  480
KKEKEHDSDM RCTMCKCIYS DQRKVIGLAG KYIHDNYVQK AVAQPVHHYL VEFAVIAGWY  540
CTSYRLPQRS KYKNPIRCQH TSACRWQDAP AEGIHFDCII PLPINPYQLP PSGGACCSTT  600
QASASAKDGG NGLQIPKPLE MYSPPCSAAA SSQGHCFAVG ANQLASLDLA MDFDEPILFP  660
VHNASLQEGI QFYNPTGDTQ LSRNMSIDKC LKGSERKGSG EGSSLLHSQE ETGEMPQREL  720
SMEHAGEKAG DADASREEYV HVRAKRGQAT NSHSLAERFR REKINERMKL LQDLVPGCNK  780
ITGKAMMLDE IINYVQSLQR QVEFLSMKLS TISPELNSDL DLQDILCSQD ARSTFLGCSP  840
RLSNAHPNLY RAAQQRLSPP GFYGSLCVPN PADVHMTRTV HLASFPQQRG LIWDEELRNI  900
APAGFASDAA GTSSLENSDS MKVE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC135157	0.0	AC135157.2 Oryza sativa Japonica Group chromosome 3 clone OJ1017C11, complete sequence.
GenBank	AP014959	0.0	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015631331.1	0.0	F-box protein SKIP22
TrEMBL	A0A0E0KAX1	0.0	A0A0E0KAX1_ORYPU; Uncharacterized protein
STRING	OPUNC03G09060.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4536	29	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-46	bHLH family protein