PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G11040.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 578aa    MW: 61317.7 Da    PI: 4.9192
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G11040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS298.22.1e-911325281373
             GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.......pmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklf 84 
                      l +lL+++Aea+s   ++ ela+ +L rl+e++s ++        +m+Rlaa+ft AL+  l +s +   +  ++ ++++++ + ++l+a++++
  OPUNC03G11040.1 132 LLHLLMAAAEALSGphKSRELARVILVRLKEMVSHTAGannaaasNMERLAAHFTDALQGLLDGSHPVGGSGRQAAAAASHHhTGDVLTAFQML 225
                      579**********8557777************77766446777779******************888777766555554444499********* PP

             GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      +++sP++kf+h+taNqaIleav+g++rvHi+D+di +G+QW++L+qa++sRp   ++p+lRiT+v+++  g +++++e g+rL+ fA+++g pf
  OPUNC03G11040.1 226 QDMSPYMKFGHFTANQAILEAVSGDRRVHIVDYDIAEGIQWASLMQAMTSRPdgVPAPHLRITAVSRSGGGGARAVQEAGRRLSAFAASIGQPF 319
                      ****************************************************666789*********7777*********************** PP

             GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnse..............sFle 255
                      +f     ++ e +++ + r+ +gE+l+ n+vl+                 ++L+ +  l ++vv+vve+e + ++                F++
  OPUNC03G11040.1 320 SFGQCRLDSDERFRPATVRMVKGETLIANCVLHQAAATTTIRRP-TgSVASFLSGMAALGANVVTVVEEEGEAEKDdngdsagdaaaaagGFVR 412
                      ****9999***********************9655554333333.247889*******************88855557899************* PP

             GRAS 256 rflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                      rf+e l+ ysa+ dslea++p++s+ r  vEr++l+++i  +v+ + +    + e    W e+++ +GF++vpls ++ +qa+lll  ++ dgy
  OPUNC03G11040.1 413 RFMEELHRYSAVWDSLEAGFPTQSRVRGLVERVILAPNIAGAVSRAYRG--VDGEGRCGWGEWMRGSGFTTVPLSCFNHSQARLLLGLFN-DGY 503
                      ********************************************99887..88899999*******************************.*** PP

             GRAS 350 rveee.sgslvlgWkdrpLvsvSaW 373
                      +vee   + +vlgWk r+L+s+S+W
  OPUNC03G11040.1 504 TVEETgPNKIVLGWKARRLMSASVW 528
                      ***99457788************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.796106509IPR005202Transcription factor GRAS
PfamPF035147.2E-89132528IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MEVTMEDVAG DFEFSGCGST TTSSASSLDD GTGMYYAWGE LSPVADCDWA NFCCSDDGGH  60
DLHGLIESML CDDTLVGVPG DGHAGLHHAD MFRDELYCYS NGSNPSSTTT TNPGSPVFDD  120
TPQDCPEKGL RLLHLLMAAA EALSGPHKSR ELARVILVRL KEMVSHTAGA NNAAASNMER  180
LAAHFTDALQ GLLDGSHPVG GSGRQAAAAA SHHHTGDVLT AFQMLQDMSP YMKFGHFTAN  240
QAILEAVSGD RRVHIVDYDI AEGIQWASLM QAMTSRPDGV PAPHLRITAV SRSGGGGARA  300
VQEAGRRLSA FAASIGQPFS FGQCRLDSDE RFRPATVRMV KGETLIANCV LHQAAATTTI  360
RRPTGSVASF LSGMAALGAN VVTVVEEEGE AEKDDNGDSA GDAAAAAGGF VRRFMEELHR  420
YSAVWDSLEA GFPTQSRVRG LVERVILAPN IAGAVSRAYR GVDGEGRCGW GEWMRGSGFT  480
TVPLSCFNHS QARLLLGLFN DGYTVEETGP NKIVLGWKAR RLMSASVWAP PPLPVPSSPP  540
EGVCQPDVGM APVATGGFAR TEFDYIDSFL VEPAYALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4817653053379Protein SCARECROW
5b3h_D4e-4817653053379Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630025.10.0nodulation-signaling pathway 2 protein
TrEMBLA0A0E0KBL20.0A0A0E0KBL2_ORYPU; Uncharacterized protein
STRINGOPUNC03G11040.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-94GRAS family protein