PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G11140.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 453aa    MW: 48188.8 Da    PI: 8.7079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G11140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.5e-05209232123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      ++C+ Cg++ s + +L+ H+ + H
  OPUNC03G11140.1 209 FPCKVCGEVLSKPQQLELHQAMkH 232
                      89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.037209237IPR007087Zinc finger, C2H2
PROSITE patternPS000280211232IPR007087Zinc finger, C2H2
SuperFamilySSF563998.06E-12234452No hitNo description
Gene3DG3DSA:3.90.228.107.0E-8241452IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MAGGGRCSSL LRGFVSLFFL LFIHIGHAGC CFSTGSSSQA LEEDDTAHGA DGRGGGGGGG  60
GKRRKISPLA FSPSVSSSTV GDERARARRR QVSSLASSVR FYLHRIFSYS SGAKNGAAPA  120
AEEEDEVVTT TVSSPLAHSS SSCLPQRQPS SVVLSTPSSP CASPFLSPLS PQSLSITPVV  180
PSSPHNKQIP QVTTRQSSFR SLAARGDVFP CKVCGEVLSK PQQLELHQAM KHSLSELSSL  240
DSSMNIIRMI FFAGWKPAVS GAGEPPSVRR ILRIHHNPRV LTRFEEYRDL VRARAARRCN  300
GAGAAAVEER CVADGNERLR FYCSTMLCTL GAGVCGSPYC CTCSILRHGF AGKQADVDGI  360
ATYSSGRAAH ASLPDDVERE FAFLQVRRAM LVCRVVAGRV GRGAADDKVA YDSMVPLLPT  420
ISAAAATRGD DDVELLVFNP RAVLPCFVII YSC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15261RGGGGGGGGK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2166690.0AC216669.3 Oryza punctata clone OP__Ba0034J15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015629299.10.0uncharacterized protein LOC4332342
TrEMBLA0A0E0KBM50.0A0A0E0KBM5_ORYPU; Uncharacterized protein
STRINGOPUNC03G11140.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.17e-57C2H2 family protein