PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G12210.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 166aa    MW: 17738.3 Da    PI: 10.0808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G12210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000835073123
                     EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                     ++C+ C++ F++   L  H  + H
  OPUNC03G12210.1 50 FQCKTCNRQFPTFQALGGHRASsH 73
                     89**********999988887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.54E-548118No hitNo description
SMARTSM003550.15073IPR015880Zinc finger, C2H2-like
PfamPF139126.7E-115075IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4115078IPR007087Zinc finger, C2H2
PROSITE patternPS0002805273IPR007087Zinc finger, C2H2
SMARTSM003554.896118IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098118IPR007087Zinc finger, C2H2
PfamPF139122.3E-798120IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MASGKRSRRQ AEEAAFSLFD SSDMVRILLL FSGAHGRGGG TAASPPERMF QCKTCNRQFP  60
TFQALGGHRA SSHKKRRCLA DGDRPPSRRP SPRCTGTCSI CGLEFAVGQA LGGHMRRHQA  120
VMVDGLGLGL RLGIGVVGQN DDEEGKKMKA AAAAELVFDL NVPALE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1370691e-139AC137069.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence.
GenBankAK1113381e-139AK111338.1 Oryza sativa Japonica Group cDNA clone:002-181-F05, full insert sequence.
GenBankAP0149591e-139AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-139CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630125.15e-58zinc finger protein ZAT7
TrEMBLA0A0E0KC271e-117A0A0E0KC27_ORYPU; Uncharacterized protein
STRINGOPUNC03G12210.11e-117(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-22C2H2 family protein