PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G13320.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 321aa    MW: 33794.9 Da    PI: 5.9785
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G13320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171462148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +   +G+g+W++++++ g ++R++k+c++r+ +yl
  OPUNC03G13320.1 14 KGPWTAEEDAKLLAYTSTHGTGNWTSVPQRAGrLKRCGKSCRLRYTNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding51.91.8e-1670111346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++T eE+el+v ++++lG++ W++Ia+ ++ gRt++++k++w++
  OPUNC03G13320.1  70 NFTHEEEELIVTLHAMLGSR-WSLIANQLP-GRTDNDVKNYWNT 111
                      89******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-22565IPR009057Homeodomain-like
PROSITE profilePS5129416.463962IPR017930Myb domain
SuperFamilySSF466898.24E-2911109IPR009057Homeodomain-like
SMARTSM007175.4E-141364IPR001005SANT/Myb domain
PfamPF002492.6E-151462IPR001005SANT/Myb domain
CDDcd001676.24E-111662No hitNo description
PROSITE profilePS5129424.69963117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2366117IPR009057Homeodomain-like
SMARTSM007171.7E-1467115IPR001005SANT/Myb domain
CDDcd001675.46E-1270113No hitNo description
PfamPF002498.7E-1570111IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRPPCCDKA NVKKGPWTAE EDAKLLAYTS THGTGNWTSV PQRAGRLKRC GKSCRLRYTN  60
YLRPNLKHEN FTHEEEELIV TLHAMLGSRW SLIANQLPGR TDNDVKNYWN TKLSKKLRQR  120
GIDPITHRPI ADLMQSIGTL AIRPPPAAGV AAYLPASPAS SAAPPPPCLP VFHDAPYFAA  180
LQHQQQQVVT HVDADAPASP DQQHLQLNWS DFLADDAAGA ALAGHGADAP APQAALGQYQ  240
EGTAAMTGVG GSRAFGDVDG ASGAGVGGAD DGAGAASAFI DAILDCDKEM GMDQLIAEML  300
ADPAYYGGGG GSSSLELGWG C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-27141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2317920.0AC231792.1 Oryza minuta clone OM__Ba0211M21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006649927.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLA0A0E0KCH70.0A0A0E0KCH7_ORYPU; Uncharacterized protein
STRINGOPUNC03G13320.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118743439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56110.12e-64myb domain protein 103