PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G13770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 462aa    MW: 49321 Da    PI: 5.1546
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G13770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.83.7e-13384407226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      ktelC+ + r G C+yG+rC+FaHg
  OPUNC03G13770.1 384 KTELCNKWER-GACPYGARCRFAHG 407
                      8*********.*************9 PP
2zf-CCCH18.14.9e-06420445126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt +C+ fa++  C+yG rC+F H+
  OPUNC03G13770.1 420 YKTLPCQMFAASSGCPYGHRCHFRHS 445
                      9**********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-16378414IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8382408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8382413IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079382409IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-10384407IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-10415446IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7416445IPR000571Zinc finger, CCCH-type
SMARTSM003560.0017419446IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.051419447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEGELSFLSP ARSSCFYFED GGSGSPTWVS TVEALLRSPT SSVSDGGGGG GGYNSPARAS  60
SPLEKQLPDC RDAGDFSSLT WASTLEKPLE SPSSCISDGR GGGFGSPASE FPPEKLLISP  120
PSCVSDSRGV GNVGGFPSLP WASSLEKPLT SPPSCVSDSR GVGNAGGFPS LPWASSLEKP  180
LTSPSSCVSD GRSGGYSSPL GASAEREREV REAEMLLRAI AERYDDCFLR LRNATAELSD  240
LRRERLRLAA ENLHLSLLLE ELESEQRKQA SAMAPPMPEE EEAAEGGAPK SISIRSPGYL  300
SQKQPQGQAR PQRLRVRASQ AMEVSPPIPC FIISFHTHLF DFCAGELMSS CPLQEAAAGD  360
DDEEEENKGG GEVEVEAYRQ GAAKTELCNK WERGACPYGA RCRFAHGLQE LRPVIRHPRY  420
KTLPCQMFAA SSGCPYGHRC HFRHSAIRTA AAAAAAAESY CC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-17384446568Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186680.0AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372670.0AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880078.10.0putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN80.0C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A0E0KCN20.0A0A0E0KCN2_ORYPU; Uncharacterized protein
STRINGOPUNC03G13770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-32C3H family protein