PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G18740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 327aa    MW: 34100.4 Da    PI: 7.7791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G18740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.2e-171664148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEde+lv +v q+Gg+ +W++ +++ g++R+ k+c++rw +yl
  OPUNC03G18740.1 16 KGPWTREEDEKLVAYVDQHGGHgSWRSLPKRAGLNRCCKSCRLRWINYL 64
                     79*******************9*************************97 PP
2Myb_DNA-binding55.41.4e-1770113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++ ++  lG++ W+tIa +++ gRt++++k++w++
  OPUNC03G18740.1  70 RGNFTPEEEQAIITLHSILGNK-WSTIATRLP-GRTDNEIKNYWNT 113
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.2961164IPR017930Myb domain
SuperFamilySSF466892.4E-2913111IPR009057Homeodomain-like
SMARTSM007171.3E-131566IPR001005SANT/Myb domain
PfamPF002491.0E-141664IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-241771IPR009057Homeodomain-like
CDDcd001671.15E-101864No hitNo description
PROSITE profilePS5129426.85965119IPR017930Myb domain
SMARTSM007171.6E-1669117IPR001005SANT/Myb domain
PfamPF002491.4E-1570113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2772119IPR009057Homeodomain-like
CDDcd001671.56E-1272115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MGRLRPPCCD ESSVKKGPWT REEDEKLVAY VDQHGGHGSW RSLPKRAGLN RCCKSCRLRW  60
INYLRPDIKR GNFTPEEEQA IITLHSILGN KWSTIATRLP GRTDNEIKNY WNTRLKKRLI  120
GAGIDPATHR VRPRPPAAGD LATALPQLVA LASLAVDLAV GHAAGSAWGG NVDYPQADAA  180
AATAQLQCLQ HLLLQPPPPH TPATSATSGG GDLNTASSFL TQAVASYAAA AAAATPLPSL  240
VIPSSQPHEL KRCQDHVGGG GGDHVGAVSS FAGTATVAGH HGDGGGGGDS TPLSGLCGAG  300
EFLPSELTAL LCNANAIGDL QSSNLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-27161194105C-Myb DNA-Binding Domain
1msf_C9e-27161194105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2321650.0AC232165.1 Oryza minuta clone OM__Ba0040K16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631094.11e-149transcription factor MYB93
SwissprotQ9S9Z23e-71MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0E0KEI30.0A0A0E0KEI3_ORYPU; Uncharacterized protein
STRINGOPUNC03G18740.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP180181010
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-70myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]