PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G18920.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 385aa    MW: 42208.3 Da    PI: 5.7949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G18920.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000243343731054
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +rRR+ri +  + Lr+++P      +k  +  ++L +A+ Y+k+L
  OPUNC03G18920.2 334 KRRRERIQETVAALRKIVPGG---IAK--DATAVLDEAICYLKYL 373
                      9******************97...333..3458999999999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.597324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00129334378No hitNo description
SuperFamilySSF474592.49E-6334381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-6334380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAQKKDDTTG ERAGVLMVWQ PVAQTRFRVF KHENGIAVRV IACFQPSQDC QAEYFRHLLK  60
PKILFAGCFL MGEKVNPWCH WSNPPWTESS ANNLHPPDVS LDNTNSLALP TYLNSDGYIY  120
SGVAASMPSI AASVADRPVS FSSRFVTTLA PSVGLSTADT LRKRPLVFFH NENNTFTVGP  180
LLSKGALDTV PELQGSNETN VTDVGAQNTE CMHENTEEID ALLCSDSDEG CLKVHELNNR  240
VRKYPMQNDT MSVESVASAG ASQPAKKRRL SSGTDRSVVD TASSARPDHS VDQKHLSHDD  300
DAQSCCIGEV ESDHQFALRE GEEAEGDDGP DDRKRRRERI QETVAALRKI VPGGIAKDAT  360
AVLDEAICYL KYLKLKVKTL GAVSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332336RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0993230.0AC099323.6 Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015631787.10.0transcription factor PIF4
TrEMBLA0A0E0KEK80.0A0A0E0KEK8_ORYPU; Uncharacterized protein
STRINGOPUNC03G18920.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100311820