PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC03G20560.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 114aa MW: 12143.1 Da PI: 8.3555

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC03G20560.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	66.3	1.1e-20	63	114	2	53
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlq 53 a++k +++++h+kv+ R R +R+++ c ar+F+L+ eL +++d +tieWLl+ OPUNC03G20560.1 63 AVRKPPSKDRHSKVDCRSRCIRMPIICVARVFQLTCELSHKSDAQTIEWLLR 114 789***********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	17.594	69	114	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.1E-17	69	113	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 114 aa Download sequence Send to blast
MRVEEGVGEV LVLVVGVSGD GVIVEGEASV VPFHVHSGGG ATAAALDKQL VPAVSKANGT 60 TLAVRKPPSK DRHSKVDCRS RCIRMPIICV ARVFQLTCEL SHKSDAQTIE WLLR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	9e-75	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	9e-75	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	9e-75	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	9e-75	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629543.1	1e-36	transcription factor TCP21
TrEMBL	A0A0E0KF63	2e-76	A0A0E0KF63_ORYPU; Uncharacterized protein
STRING	OPUNC03G20560.1	3e-77	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23835	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	3e-27	TCP family protein