PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G20770.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 417aa    MW: 44276.9 Da    PI: 6.5965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G20770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00061280302123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ Cg++F +   L  H  +H
  OPUNC03G20770.1 280 YECHGCGRVFQSYQALGGHRASH 302
                      99********9999988888777 PP
2zf-C2H211.90.00071355377123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ++Cp+C+k F +   L  H r+H
  OPUNC03G20770.1 355 FVCPICSKEFGSGQALGGHKRSH 377
                      89**************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-41740IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.67E-71739No hitNo description
SMARTSM003550.161739IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5331740IPR007087Zinc finger, C2H2
PfamPF139127.4E-51739IPR007087Zinc finger, C2H2
PROSITE patternPS0002801939IPR007087Zinc finger, C2H2
SuperFamilySSF576671.67E-7275302No hitNo description
PfamPF139126.7E-11279304IPR007087Zinc finger, C2H2
SMARTSM003550.25280302IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076280307IPR007087Zinc finger, C2H2
PROSITE patternPS000280282302IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.18355378IPR007087Zinc finger, C2H2
SMARTSM003550.048355377IPR015880Zinc finger, C2H2-like
PfamPF139127.9E-12355378IPR007087Zinc finger, C2H2
PROSITE patternPS000280357377IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDDDDVVVLS SASATRHSCK VCGKGFACGR SLGGHMRSHS LMEVEAAAAD ADEGGDGKIV  60
RRWMQSGGGG GGGYGLRENP KKTRRLSAGS GGGGGGGDDD DGDACHHRGG DLLSSSSCRP  120
VLGRVRNHAP PAGGAAYADD SEDVGVDVDV DGGGNDRDRE MLVMAAPRRR PRSMRVPAPV  180
RDEFVVDEEP EDVALCLVML SRDTGRPWNS RPNDEYSSLM YNNSNYDHHH HHHDAASDDD  240
LELSLSSPYT DTEIRSKKRR KTTTTMGAAS TAGGEKRGRY ECHGCGRVFQ SYQALGGHRA  300
SHKRINSNCS LVKAPADQPE PSIETSFSST STSVSPDAMI GAAIVPKTVK KPTKFVCPIC  360
SKEFGSGQAL GGHKRSHSIV GELYERGHAD GIVKPEQPLL ADRFLDLNLP APGGDDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166172PRRRPRS
2256260KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1379990.0AC137999.2 Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence.
GenBankAK1055830.0AK105583.1 Oryza sativa Japonica Group cDNA clone:001-128-E09, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630118.10.0uncharacterized protein LOC4333158
TrEMBLA0A0E0KF930.0A0A0E0KF93_ORYPU; Uncharacterized protein
STRINGOPUNC03G20770.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-20C2H2-like zinc finger protein